| scholarly article | Q13442814 |
| P2093 | author name string | Mike S M Jetten | |
| Ana B Rios Miguel | |||
| Cornelia U Welte | |||
| P2860 | cites work | The genes coding for the conversion of carbazole to catechol are flanked by IS6100 elements in Sphingomonas sp. strain XLDN2-5 | Q21136405 |
| Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp | Q24550513 | ||
| Bioaugmentation: An Emerging Strategy of Industrial Wastewater Treatment for Reuse and Discharge | Q26738424 | ||
| Degradative pathways for p-toluenecarboxylate and p-toluenesulfonate and their multicomponent oxygenases in Comamonas testosteroni strains PSB-4 and T-2 | Q28291432 | ||
| Biotransformation of Two Pharmaceuticals by the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis | Q28830523 | ||
| Community-wide plasmid gene mobilization and selection | Q30540003 | ||
| Prevalence of lysogeny among soil bacteria and presence of 16S rRNA and trzN genes in viral-community DNA. | Q30836271 | ||
| Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria | Q31100750 | ||
| Bioaugmentation of aerobic microbial granules with Pseudomonas putida carrying TOL plasmid | Q33310109 | ||
| Census of the viral metagenome within an activated sludge microbial assemblage | Q33531064 | ||
| Identification of diverse antimicrobial resistance determinants carried on bacterial, plasmid, or viral metagenomes from an activated sludge microbial assemblage | Q33552140 | ||
| Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains | Q33570193 | ||
| cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data | Q33600836 | ||
| Shifts in abundance and diversity of mobile genetic elements after the introduction of diverse pesticides into an on-farm biopurification system over the course of a year | Q33743353 | ||
| Analysis of transduction in wastewater bacterial populations by targeting the phage-derived 16S rRNA gene sequences | Q33790346 | ||
| In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing | Q33798308 | ||
| Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae | Q33989043 | ||
| Map of the IncP1beta plasmid pTSA encoding the widespread genes (tsa) for p-toluenesulfonate degradation in Comamonas testosteroni T-2 | Q33989222 | ||
| Species-level deconvolution of metagenome assemblies with Hi-C-based contact probability maps | Q34041056 | ||
| Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales | Q34057523 | ||
| Life after death: the critical role of extracellular DNA in microbial biofilms. | Q34357136 | ||
| Viral metagenomics | Q34417786 | ||
| Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in Comamonas sp. strain CNB-1 | Q34432270 | ||
| Molecular and cellular fundamentals of aerobic cometabolism of trichloroethylene | Q34441017 | ||
| Metagenomic analysis reveals the prevalence of biodegradation genes for organic pollutants in activated sludge | Q34514627 | ||
| Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement | Q34737585 | ||
| Laboratory procedures to generate viral metagenomes | Q34965860 | ||
| When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuum | Q35013459 | ||
| Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics | Q35145325 | ||
| The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds | Q35172600 | ||
| Identification of a toluene-degrading bacterium from a soil sample through H(2)(18)O DNA stable isotope probing | Q35191744 | ||
| Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. | Q35613132 | ||
| Plasmid Detection, Characterization, and Ecology | Q35781041 | ||
| Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers | Q35783427 | ||
| Nucleotide sequence of plasmid pCNB1 from comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation | Q35913350 | ||
| Use of the University of Minnesota Biocatalysis/Biodegradation Database for study of microbial degradation | Q35958113 | ||
| Perspectives and vision for strain selection in bioaugmentation | Q36015346 | ||
| Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants | Q36098309 | ||
| Mobile genetic elements: the agents of open source evolution | Q36247081 | ||
| Microbial degradation of organophosphorus compounds. | Q36440563 | ||
| Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome | Q37009655 | ||
| Optical tweezers for single cells | Q37125303 | ||
| The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community | Q37442626 | ||
| Contribution of wastewater treatment plant effluents to nutrient dynamics in aquatic systems: a review. | Q37490902 | ||
| Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters | Q37587424 | ||
| Bioaugmentation as a strategy for cleaning up of soils contaminated with aromatic compounds | Q37593272 | ||
| Mobility of plasmids. | Q37784107 | ||
| Bacteriophages and genetic mobilization in sewage and faecally polluted environments. | Q37871062 | ||
| Potential impact of environmental bacteriophages in spreading antibiotic resistance genes | Q38108837 | ||
| Cometabolic degradation of organic wastewater micropollutants by activated sludge and sludge-inherent microorganisms | Q38215387 | ||
| A review on emerging contaminants in wastewaters and the environment: current knowledge, understudied areas and recommendations for future monitoring. | Q38255406 | ||
| Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements. | Q38688098 | ||
| From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions | Q38848033 | ||
| Low-frequency horizontal transfer of an element containing the chlorocatechol degradation genes from Pseudomonas sp. strain B13 to Pseudomonas putida F1 and to indigenous bacteria in laboratory-scale activated-sludge microcosms. | Q39560943 | ||
| The beta-lactamases of gram-negative bacteria and their possible physiological role. | Q39930404 | ||
| Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers | Q39930673 | ||
| Comparative genome analysis reveals genetic adaptation to versatile environmental conditions and importance of biofilm lifestyle in Comamonas testosteroni. | Q53288586 | ||
| Antibiotic Resistance. | Q53706891 | ||
| Effects of gene augmentation on the removal of 2,4-dichlorophenoxyacetic acid in a biofilm reactor under different scales and substrate conditions | Q54406325 | ||
| Molecular and Evolutionary Determinants of Bacteriophage Host Range | Q56535659 | ||
| Linked read technology for assembling large complex and polyploid genomes | Q57161080 | ||
| A Comparison of Methods for the Extraction of Plasmids Capable of Conferring Antibiotic Resistance in a Human Pathogen From Complex Broiler Cecal Samples | Q58785638 | ||
| Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing | Q64066680 | ||
| Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad | Q69813539 | ||
| Channeling DNA for optical mapping | Q84748557 | ||
| Genetic Bioaugmentation of Activated Sludge with Dioxin-Catabolic Plasmids Harbored by Rhodococcus sp. Strain p52 | Q88243795 | ||
| Extracellular DNA in natural environments: features, relevance and applications | Q88956843 | ||
| Why are organic micropollutants not fully biotransformed? A mechanistic modelling approach to anaerobic systems | Q88977249 | ||
| High-throughput sequencing (HTS) for the analysis of viral populations | Q89452597 | ||
| Opportunities and challenges in long-read sequencing data analysis | Q89599627 | ||
| PlasGUN: Gene prediction in plasmid metagenomic short reads using deep learning | Q89855963 | ||
| The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific | Q90630676 | ||
| Consolidated vs new advanced treatment methods for the removal of contaminants of emerging concern from urban wastewater | Q90704398 | ||
| Assessment of extracellular antibiotic resistance genes (eARGs) in typical environmental samples and the transforming ability of eARG | Q91317689 | ||
| Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation | Q91397839 | ||
| PlasClass improves plasmid sequence classification | Q91533205 | ||
| Plasmid detection and assembly in genomic and metagenomic data sets | Q91709676 | ||
| gplas: a comprehensive tool for plasmid analysis using short-read graphs | Q91763192 | ||
| Micropollutants in treated wastewater | Q91778319 | ||
| Redistribution of intracellular and extracellular free & adsorbed antibiotic resistance genes through a wastewater treatment plant by an enhanced extracellular DNA extraction method with magnetic beads | Q91832769 | ||
| Conjugative transfer of Megaplasmids pND6-1 and pND6-2 enhancing naphthalene degradation in aqueous environment: characterization and bioaugmentation prospects | Q91856860 | ||
| Sated by a Zero-Calorie Sweetener: Wastewater Bacteria Can Feed on Acesulfame | Q91868218 | ||
| Formation of new PHE plasmids in pseudomonads in a phenol-polluted environment | Q91914848 | ||
| Amplification-free library preparation with SAFE Hi-C uses ligation products for deep sequencing to improve traditional Hi-C analysis | Q92159068 | ||
| Linking the resistome and plasmidome to the microbiome | Q92419542 | ||
| Effect-based methods in combination with state-of-the-art chemical analysis for assessment of water quality as integrated approach | Q92535207 | ||
| Antibiotic resistance genes identified in wastewater treatment plant systems - A review | Q93076302 | ||
| Deciphering extracellular antibiotic resistance genes (eARGs) in activated sludge by metagenome | Q93123239 | ||
| metaviralSPAdes: assembly of viruses from metagenomic data | Q94938011 | ||
| Release mechanisms and molecular interactions of Pseudomonas aeruginosa extracellular DNA | Q96157177 | ||
| Community dynamics of denitrifying bacteria in full-scale wastewater treatment plants | Q39955579 | ||
| IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes | Q40006612 | ||
| Mobilizable genomic islands, different strategies for the dissemination of multidrug resistance and other adaptive traits. | Q40229412 | ||
| The use of adenoviral vectors for gene therapy and gene transfer in vivo | Q40425311 | ||
| Organic compounds stimulate horizontal transfer of antibiotic resistance genes in mixed wastewater treatment systems. | Q40475754 | ||
| IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes | Q40482877 | ||
| Environmental potential of suicide genes | Q40533344 | ||
| The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas. | Q40535883 | ||
| Delftia acidovorans: A rare pathogen in immunocompetent and immunocompromised patients | Q40897642 | ||
| Functional analysis of unique class II insertion sequence IS1071. | Q42122350 | ||
| Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. | Q42604612 | ||
| Survival and catabolic activity of natural and genetically engineered bacteria in a laboratory-scale activated-sludge unit | Q42609143 | ||
| A novel 2-aminophenol 1,6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas strain CNB-1: purification, properties, genetic cloning and expression in Escherichia coli | Q42641963 | ||
| Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8. | Q42644532 | ||
| Transfer of plasmid pJP4 from Escherichia coli and Pseudomonas putida to bacteria in activated sludge developed under different sludge retention times | Q42941328 | ||
| Bioaugmentation of aerobic sludge granules with a plasmid donor strain for enhanced degradation of 2,4-dichlorophenoxyacetic acid | Q43079639 | ||
| Diversity of activated sludge bacteria receiving the 3-chloroaniline-degradative plasmid pC1gfp | Q43283175 | ||
| Bioaugmentation of a sequencing batch biofilm reactor by horizontal gene transfer. | Q43313619 | ||
| Effect of phenol on the nitrogen removal performance and microbial community structure and composition of an anammox reactor | Q43318492 | ||
| Plasmid-mediated bioaugmentation of activated sludge bacteria in a sequencing batch moving bed reactor using pNB2. | Q43325927 | ||
| Persistence and dissemination of the multiple-antibiotic-resistance plasmid pB10 in the microbial communities of wastewater sludge microcosms. | Q43327865 | ||
| Characterization of a collection of plasmid-containing bacteria isolated from an on-farm biopurification system used for pesticide removal | Q43333056 | ||
| IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet | Q43344871 | ||
| High prevalence of IncP-1 plasmids and IS1071 insertion sequences in on-farm biopurification systems and other pesticide-polluted environments | Q43360428 | ||
| Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant. | Q43362303 | ||
| Bioaugmentation of microbial communities in laboratory and pilot scale sequencing batch biofilm reactors using the TOL plasmid | Q43366116 | ||
| Bioaugmentation of activated sludge towards 3-chloroaniline removal with a mixed bacterial population carrying a degradative plasmid | Q43368201 | ||
| All IncP-1 plasmid subgroups, including the novel epsilon subgroup, are prevalent in the influent of a Danish wastewater treatment plant | Q43369333 | ||
| Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria. | Q43969568 | ||
| Conjugal transfer of plasmid pNB2 to activated sludge bacteria leads to 3-chloroaniline degradation in enrichment cultures | Q44885881 | ||
| Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding. | Q45953729 | ||
| Repeated application of carvone-induced bacteria to enhance biodegradation of polychlorinated biphenyls in soil. | Q46013620 | ||
| Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. | Q46243992 | ||
| Subinhibitory Concentrations of Disinfectants Promote the Horizontal Transfer of Multidrug Resistance Genes within and across Genera. | Q46442838 | ||
| Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria | Q46459432 | ||
| PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes | Q47785075 | ||
| Two identical nonylphenol monooxygenase genes linked to IS6100 and some putative insertion sequence elements in Sphingomonas sp. NP5. | Q48050532 | ||
| Cometabolic Enzymatic Transformation of Organic Micropollutants under Methanogenic Conditions. | Q48235144 | ||
| PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures | Q49964207 | ||
| Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge | Q50103247 | ||
| Sub-inhibitory concentrations of heavy metals facilitate the horizontal transfer of plasmid-mediated antibiotic resistance genes in water environment. | Q51151331 | ||
| Long-term dynamics of catabolic plasmids introduced to a microbial community in a polluted environment: a mathematical model. | Q51705593 | ||
| P921 | main subject | wastewater treatment | Q20127660 |
| P304 | page(s) | 100065 | |
| P577 | publication date | 2020-08-29 | |
| P1433 | published in | Water research X | Q96320904 |
| P1476 | title | The role of mobile genetic elements in organic micropollutant degradation during biological wastewater treatment | |
| P478 | volume | 9 |
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