| scholarly article | Q13442814 |
| P50 | author | Jonathan Liu | Q92266888 |
| Hernan G. Garcia | Q100731065 | ||
| Shelby A. Blythe | Q38642209 | ||
| P2093 | author name string | Elizabeth Eck | |
| Maryam Kazemzadeh-Atoufi | |||
| Sydney Ghoreishi | |||
| P2860 | cites work | Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation | Q54294539 |
| Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle. | Q55085098 | ||
| The Quasi-Steady-State Assumption: A Case Study in Perturbation | Q56210926 | ||
| Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting | Q58593977 | ||
| Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs | Q59792536 | ||
| Dynamic multifactor hubs interact transiently with sites of active transcription in embryos | Q60931061 | ||
| Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation | Q71566510 | ||
| Evolutionary and functional insights into the mechanism underlying body-size-related adaptation of mammalian hemoglobin | Q83227653 | ||
| Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity | Q83232121 | ||
| Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression | Q91989068 | ||
| Multimodal transcriptional control of pattern formation in embryonic development | Q92286420 | ||
| Predictive shifts in free energy couple mutations to their phenotypic consequences | Q92882061 | ||
| The Drosophila Pioneer Factor Zelda Modulates the Nuclear Microenvironment of a Dorsal Target Enhancer to Potentiate Transcriptional Output | Q93080488 | ||
| Gene Regulation in and out of Equilibrium | Q94571912 | ||
| Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition | Q21563380 | ||
| Physics of chemoreception | Q24546294 | ||
| Progression of the cell cycle through mitosis leads to abortion of nascent transcripts | Q24642939 | ||
| A genomic code for nucleosome positioning | Q24650238 | ||
| Interplay between positive and negative activities that influence the role of Bicoid in transcription | Q24813834 | ||
| ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL | Q27861036 | ||
| Trade-offs and constraints in allosteric sensing | Q28477808 | ||
| Thermodynamic State Ensemble Models of cis-Regulation | Q28481731 | ||
| Localization of ASH1 mRNA particles in living yeast | Q29614818 | ||
| Identifying DNA and protein patterns with statistically significant alignments of multiple sequences | Q29615307 | ||
| Mutations of the Drosophila zinc finger-encoding gene vielfältig impair mitotic cell divisions and cause improper chromosome segregation | Q30477157 | ||
| Stability and nuclear dynamics of the bicoid morphogen gradient | Q30481327 | ||
| Foundations for engineering biology | Q30482962 | ||
| Decision making at a subcellular level determines the outcome of bacteriophage infection | Q30494599 | ||
| Statistical mechanics of Monod-Wyman-Changeux (MWC) models | Q30547523 | ||
| The transcription factor titration effect dictates level of gene expression | Q30582620 | ||
| Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos | Q30585347 | ||
| Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data | Q30703913 | ||
| Analysis of combinatorial cis-regulation in synthetic and genomic promoters | Q33386730 | ||
| Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources | Q33551343 | ||
| Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression | Q33700661 | ||
| On schemes of combinatorial transcription logic | Q33711386 | ||
| Zelda potentiates morphogen activity by increasing chromatin accessibility | Q33821232 | ||
| Temporal coordination of gene networks by Zelda in the early Drosophila embryo. | Q34058205 | ||
| Transcriptional Enhancers in Animal Development and Evolution | Q34137394 | ||
| Living without 30nm chromatin fibers | Q34142094 | ||
| Quantitative model for gene regulation by lambda phage repressor | Q34261203 | ||
| Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters | Q34276083 | ||
| Precise Developmental Gene Expression Arises from Globally Stochastic Transcriptional Activity | Q34364634 | ||
| Nucleosome-mediated cooperativity between transcription factors | Q34450175 | ||
| Chemosensing in Escherichia coli: two regimes of two-state receptors | Q34478548 | ||
| Tuning promoter strength through RNA polymerase binding site design in Escherichia coli | Q34524579 | ||
| Precision of Hunchback Expression in the Drosophila Embryo | Q34639257 | ||
| Dynamical analysis of regulatory interactions in the gap gene system of Drosophila melanogaster | Q34645803 | ||
| A gradient of bicoid protein in Drosophila embryos | Q34687844 | ||
| The nonequilibrium mechanism for ultrasensitivity in a biological switch: sensing by Maxwell's demons | Q34805576 | ||
| A framework for modelling gene regulation which accommodates non-equilibrium mechanisms | Q34887134 | ||
| Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. | Q35058171 | ||
| Quantitative dissection of the simple repression input-output function | Q35123050 | ||
| The cis-regulatory logic of Hedgehog gradient responses: key roles for gli binding affinity, competition, and cooperativity | Q35153238 | ||
| Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition | Q35173164 | ||
| Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics | Q35234604 | ||
| The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding | Q35557755 | ||
| Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo | Q35743239 | ||
| Combining protein and mRNA quantification to decipher transcriptional regulation | Q35907776 | ||
| Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo | Q35942104 | ||
| A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data. | Q36005275 | ||
| Transcriptional regulation by the numbers: models. | Q36083228 | ||
| Transcriptional regulation by the numbers: applications | Q36083233 | ||
| Precision of Readout at the hunchback Gene: Analyzing Short Transcription Time Traces in Living Fly Embryos | Q36220219 | ||
| A model of spatially restricted transcription in opposing gradients of activators and repressors | Q36321629 | ||
| A system of repressor gradients spatially organizes the boundaries of Bicoid-dependent target genes | Q36503786 | ||
| Gene regulation by chromatin structure: paradigms established in Drosophila melanogaster | Q36553584 | ||
| Mitotic Repression of RNA Polymerase II Transcription Is Accompanied by Release of Transcription Elongation Complexes | Q36573020 | ||
| Enhancer-like long-range transcriptional activation by λ CI-mediated DNA looping | Q36637492 | ||
| Chromatin decouples promoter threshold from dynamic range | Q36732068 | ||
| Operator Sequence Alters Gene Expression Independently of Transcription Factor Occupancy in Bacteria | Q36739284 | ||
| Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network | Q36799112 | ||
| Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo | Q36879251 | ||
| Deducing receptor signaling parameters from in vivo analysis: LuxN/AI-1 quorum sensing in Vibrio harveyi | Q36980333 | ||
| The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila | Q37003783 | ||
| A quantitative model of transcription factor-activated gene expression | Q37226832 | ||
| Eukaryotic transcriptional dynamics: from single molecules to cell populations | Q37253556 | ||
| Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning | Q37308421 | ||
| Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila | Q37666396 | ||
| Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative | Q38298166 | ||
| Using the MWC model to describe heterotropic interactions in hemoglobin. | Q38632051 | ||
| Measurement of gene regulation in individual cells reveals rapid switching between promoter states | Q39466038 | ||
| Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs | Q39738882 | ||
| Collaborative competition mechanism for gene activation in vivo | Q39740430 | ||
| Sensitivity of OR in phage lambda | Q40269296 | ||
| The co-activator CREB-binding protein participates in enhancer-dependent activities of bicoid | Q40516931 | ||
| Mitotic repression of the transcriptional machinery. | Q41516335 | ||
| Establishment and maintenance of heritable chromatin structure during early Drosophila embryogenesis. | Q41809122 | ||
| Incorporating nucleosomes into thermodynamic models of transcription regulation | Q41909104 | ||
| Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo. | Q42025274 | ||
| Probing the limits to positional information | Q42078954 | ||
| Information Integration and Energy Expenditure in Gene Regulation | Q42180396 | ||
| Concentration dependent chromatin states induced by the bicoid morphogen gradient | Q42273867 | ||
| Thermodynamic models of combinatorial gene regulation by distant enhancers | Q43493950 | ||
| Computational models for neurogenic gene expression in the Drosophila embryo. | Q46006127 | ||
| The role of DNA sequence in nucleosome breathing. | Q46237278 | ||
| A conserved maternal-specific repressive domain in Zelda revealed by Cas9-mediated mutagenesis in Drosophila melanogaster. | Q47271393 | ||
| Frequency Modulation of Transcriptional Bursting Enables Sensitive and Rapid Gene Regulation | Q49895264 | ||
| Live imaging of bicoid-dependent transcription in Drosophila embryos. | Q50714696 | ||
| Predicting expression patterns from regulatory sequence in Drosophila segmentation | Q51897395 | ||
| Dynamic control of positional information in the early Drosophila embryo. | Q51994119 | ||
| DNA looping and physical constraints on transcription regulation. | Q52010688 | ||
| Identification of consensus patterns in unaligned DNA sequences known to be functionally related | Q52241864 | ||
| Parameters controlling transcriptional activation during early Drosophila development | Q52451717 | ||
| Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen | Q52452949 | ||
| The gradient morphogen bicoid is a concentration-dependent transcriptional activator | Q52453670 | ||
| The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo | Q52456769 | ||
| Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm | Q52459337 | ||
| Estrogen-dependent control and cell-to-cell variability of transcriptional bursting. | Q52687717 | ||
| Tuning Transcriptional Regulation through Signaling: A Predictive Theory of Allosteric Induction | Q52724460 | ||
| cis Determinants of Promoter Threshold and Activation Timescale. | Q53382572 | ||
| P577 | publication date | 2020-10-19 | |
| P1433 | published in | eLife | Q2000008 |
| P1476 | title | Quantitative dissection of transcription in development yields evidence for transcription factor-driven chromatin accessibility | |
| P478 | volume | 9 |
| Q112700505 | Differential regulation of alternative promoters emerges from unified kinetics of enhancer-promoter interaction | cites work | P2860 |
Search more.