High-throughput genotyping of high-homology mutant mouse strains by next-generation sequencing

scientific article published on 20 October 2020

High-throughput genotyping of high-homology mutant mouse strains by next-generation sequencing is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.YMETH.2020.10.011
P932PMC publication ID8205115
P698PubMed publication ID33096238

P50authorRadka PlatteQ98148377
P2093author name stringJoanna Bottomley
Daniel Barrett
Diane Gleeson
Edward Ryder
James Bussell
Shaheen Akhtar
Debarati Sethi
Michaela Bruntraeger
Jonathan Burvill
P2860cites workStructure and evolution of the mouse pregnancy-specific glycoprotein (Psg) gene locusQ21266603
Robust and sensitive analysis of mouse knockout phenotypesQ21559650
A conditional knockout resource for the genome-wide study of mouse gene functionQ21735918
Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genesQ24597048
Mouse large-scale phenotyping initiatives: overview of the European Mouse Disease Clinic (EUMODIC) and of the Wellcome Trust Sanger Institute Mouse Genetics ProjectQ24631734
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodQ25938999
INFRAFRONTIER: a European resource for studying the functional basis of human diseaseQ26748700
Fast gapped-read alignment with Bowtie 2Q27860699
High-throughput engineering of the mouse genome coupled with high-resolution expression analysisQ28202486
Improving bioscience research reporting: the ARRIVE guidelines for reporting animal researchQ29547313
One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineeringQ29547524
Improved protocols for the illumina genome analyzer sequencing systemQ30446288
Prevalence of sexual dimorphism in mammalian phenotypic traitsQ33851019
CRISPR/Cas9-mediated gene knockout in the mouse brain using in utero electroporationQ34046124
Somatic mosaicism and allele complexity induced by CRISPR/Cas9 RNA injections in mouse zygotesQ34200242
High resolution melt analysis (HRMA); a viable alternative to agarose gel electrophoresis for mouse genotypingQ34428490
Reproducibility: use mouse biobanks or lose themQ35660335
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disordersQ35793513
Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafishQ35968268
Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencingQ36076542
Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reactionQ36096483
Failure to Genotype: A Cautionary Note on an Elusive loxP SequenceQ36170789
High-throughput genotyping of CRISPR/Cas9-mediated mutants using fluorescent PCR-capillary gel electrophoresisQ36205889
High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomyQ36271269
Next-generation sequencing of experimental mouse strainsQ36296093
Chromosome engineering in zygotes with CRISPR/Cas9.Q36762223
Molecular characterization of mutant mouse strains generated from the EUCOMM/KOMP-CSD ES cell resourceQ37100323
Rapid conversion of EUCOMM/KOMP-CSD alleles in mouse embryos using a cell-permeable Cre recombinaseQ37471738
High-throughput discovery of novel developmental phenotypesQ37629635
Efficient and rapid generation of large genomic variants in rats and mice using CRISMEREQ37683801
Pregnancy-specific glycoproteins: complex gene families regulating maternal-fetal interactionsQ38229473
Genome-wide in vivo screen identifies novel host regulators of metastatic colonizationQ38723015
Analysing the outcome of CRISPR-aided genome editing in embryos: Screening, genotyping and quality controlQ39212049
A large scale hearing loss screen reveals an extensive unexplored genetic landscape for auditory dysfunction.Q42375961
Using the mouse to model human disease: increasing validity and reproducibilityQ42599011
Identification of genetic elements in metabolism by high-throughput mouse phenotypingQ47643645
Highly-efficient, fluorescent, locus directed cre and FlpO deleter mice on a pure C57BL/6N genetic background.Q50507031
Placentation defects are highly prevalent in embryonic lethal mouse mutants.Q52726584
Animal-based studies will be essential for precision medicine.Q52848545
Editing mammalian genomes: ethical considerations.Q53194473
Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.Q55317074
The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservationQ57090269
No unexpected CRISPR-Cas9 off-target activity revealed by trio sequencing of gene-edited miceQ89475108
The Deep Genome ProjectQ89488064
Ensembl 2020Q91135329
Optimizing PCR for Mouse Genotyping: Recommendations for Reliable, Rapid, Cost Effective, Robust and Adaptable to High-Throughput Genotyping Protocol for Any Type of MutationQ91395278
CRISPResso2 provides accurate and rapid genome editing sequence analysisQ91945589
New models for human disease from the International Mouse Phenotyping ConsortiumQ92283778
Editing the Genome of Human Induced Pluripotent Stem Cells Using CRISPR/Cas9 Ribonucleoprotein ComplexesQ92620150
Common and distinct transcriptional signatures of mammalian embryonic lethalityQ93052863
P4510describes a project that usesmassive parallel sequencingQ6784807
P577publication date2020-10-20
P1433published inMethodsQ6823859
P1476titleHigh-throughput genotyping of high-homology mutant mouse strains by next-generation sequencing