primer design

molecular genetics technique

primer design is …
instance of (P31):
techniqueQ2695280

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main subject (P921)
Q887169355C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design
Q41840547A CRISPR/Cas9-based method and primer design tool for seamless genome editing in fission yeast.
Q41172596A New Multiplex-PCR for Urinary Tract Pathogen Detection Using Primer Design Based on an Evolutionary Computation Method
Q46508900A Next Generation Sequencing PCR Primer Design Tool for Sanger Sequencing Confirmation by CE.
Q35926266A Novel Teaching-Learning-Based Optimization for Improved Mutagenic Primer Design in Mismatch PCR-RFLP SNP Genotyping
Q79209112A User's Guide to the Human Genome. Question 6. How would one retrieve the sequence of a gene, along with all annotated exons and introns, as well as a certain number of flanking bases for use in primer design?
Q104670484A method for designing primer sets for speciation studies in filamentous ascomycetes
Q34960846A multiple-alignment based primer design algorithm for genetically highly variable DNA targets
Q36409464A multiplex primer design algorithm for target amplification of continuous genomic regions
Q33360951A new approach to primer design for the control of PCR bias in methylation studies
Q54388071A primer design strategy for PCR amplification of GC-rich DNA sequences.
Q36061956A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil
Q37273679A thermodynamic approach to PCR primer design
Q30355372AAscan, PCRdesign and MutantChecker: a suite of programs for primer design and sequence analysis for high-throughput scanning mutagenesis.
Q98618514ARDEP, a Rapid Degenerate Primer Design Pipeline Based on k-mers for Amplicon Microbiome Studies
Q33319564Accumulating variation at conserved sites in potyvirus genomes is driven by species discovery and affects degenerate primer design
Q48274426AcePrimer: automation of PCR primer design based on gene structure
Q38316818Allele dropout caused by a non-primer-site SNV affecting PCR amplification--a call for next-generation primer design algorithm
Q33284183Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions
Q99210973An adaptable dry lab for SYBR based RT-qPCR primer design to reinforce concepts in molecular biology and nucleic acids
Q41850621An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana
Q36391841An improved allele-specific PCR primer design method for SNP marker analysis and its application
Q74778511An introduction to PCR primer design and optimization of amplification reactions
Q29038147Analysis of partial Glomales SSU rRNA gene sequences: implications for primer design and phylogeny
Q33945291Applying instructional design theories to bioinformatics education in microarray analysis and primer design workshops
Q42972869Association of inducible nitric oxide synthetase genotype and Helicobacter pylori infection gastric cancer risk may be due to faulty primer design
Q97545566AutoCloner: automatic homologue-specific primer design for full-gene cloning in polyploids
Q30422501Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing
Q42150677Automation of a primer design and evaluation pipeline for subsequent sequencing of the coding regions of all human Refseq genes
Q21284205BatchPrimer3: a high throughput web application for PCR and sequencing primer design
Q35101925Better primer design for metagenomics applications by increasing taxonomic distinguishability
Q24794804BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes
Q40711504CEMAsuite: open source degenerate PCR primer design
Q35207595CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design
Q38339905CODEHOP PCR and CODEHOP PCR primer design
Q51401644CRISPR Primer Designer: Design primers for knockout and chromosome imaging CRISPR-Cas system.
Q33235878CalcDalton: a tool for multiplex genotyping primer design for single-base extension reactions using cleavable primers
Q100996746Classification and review of free PCR primer design software
Q38430172CloneAssistant 1.0: A stand-alone software for automated cloning primer design
Q34185832Comprehensive primer design for analysis of population genetics in non-sequenced organisms
Q54799201Computer programs for PCR primer design and analysis.
Q33717449Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm.
Q33509522Conservative fragments in bacterial 16S rRNA genes and primer design for 16S ribosomal DNA amplicons in metagenomic studies
Q33510272ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
Q84231810DNA and general PCR methods: PCR primer design
Q37347878DPPrimer - A Degenerate PCR Primer Design Tool
Q31109873Data in support of qPCR primer design and verification in a Pink1 -/- rat model of Parkinson disease.
Q97541686Data on PCR primer design for glucose 6-phosphate dehydrogenase gene and the effects of dietary carbohydrate levels on its expression in the liver of Malaysian mahseer (Tor tambroides)
Q92357418Data on Quantitative Microbial Elemental Cycling (QMEC) primer design and validation
Q39804418DePIE: Designing Primers for Protein Interaction Experiments.
Q30209751DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies
Q41612747Degenerate PCR primer design for the specific identification of rhinovirus C.
Q41388121Degenerate primer design for highly variable genomes
Q34340944Degenerate primer design to clone the human repertoire of immunoglobulin heavy chain variable regions
Q33993268Degenerate primer design via clustering.
Q36977355Degenerate primer design: theoretical analysis and the HYDEN program
Q33268951Degenerated primer design to amplify the heavy chain variable region from immunoglobulin cDNA
Q89137325Degenerative primer design and gene sequencing validation for select turkey genes
Q34510527DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures
Q46306873Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius
Q86776051Designing primers for SNaPshot technique
Q36977383Designing primers for whole genome PCR scanning using the software package GenoFrag: a software package for the design of primers dedicated to whole-genome scanning by LR-PCR.
Q38345854Designing primers from multiple sequences using Matchup program to improve detection of hepatitis B virus by polymerase chain reaction
Q36977333Developing a statistical model for primer design
Q92768076Development of the Automated Primer Design Workflow Uniqprimer and Diagnostic Primers for the Broad-Host-Range Plant Pathogen Dickeya dianthicola
Q89710888Diagnostic reliability of nested PCR depends on the primer design and threshold abundance of Helicobacter pylori in biopsy, stool, and saliva samples
Q48526750Dual-genome primer design for construction of DNA microarrays
Q51993140EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.
Q45979006EasyExonPrimer: automated primer design for exon sequences.
Q36105094Effective Natural PCR-RFLP Primer Design for SNP Genotyping Using Teaching-Learning-Based Optimization With Elite Strategy
Q48681821Efficient primer design algorithms
Q53081759Enhanced sensitivity of CpG island search and primer design based on predicted CpG island position.
Q40230955Enhancements and modifications of primer design program Primer3.
Q54271538Entropy-based approach for selecting informative regions in the L1 gene of bovine papillomavirus for phylogenetic inference and primer design.
Q42381023Erratum to: MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research
Q50634540Estimation of teaching-learning-based optimization primer design using regression analysis for different melting temperature calculations.
Q43481157Exon-primed, intron-crossing (EPIC) loci for five nuclear genes in deep-sea protobranch bivalves: primer design, PCR protocols and locus utility
Q81143904Expeditor: a pipeline for designing primers using human gene structure and livestock animal EST information
Q43750791Explanatory chapter: PCR primer design
Q33757798FONZIE: An optimized pipeline for minisatellite marker discovery and primer design from large sequence data sets.
Q21285080Family-specific degenerate primer design: a tool to design consensus degenerated oligonucleotides
Q64324215Field and Colliery Surveying A Primer Designed for the Use of Students of Surveying and Colliery Manager Aspirants
Q92538048GLAPD: Whole Genome Based LAMP Primer Design for a Set of Target Genomes
Q39227546GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags
Q36977337GST-PRIME: an algorithm for genome-wide primer design
Q101037391Gene selection,primer design and their utility on the studies of plant molecular phylogeny and evolution
Q73195002GeneJockeyII. Primer design
Q56059171General concepts for PCR primer design
Q54138495Genetic Fingerprinting Using Microsatellite Markers in a Multiplex PCR Reaction: A Compilation of Methodological Approaches from Primer Design to Detection Systems.
Q36977341Genome-scale probe and primer design with PRIMEGENS.
Q92266688Golden Mutagenesis: An efficient multi-site-saturation mutagenesis approach by Golden Gate cloning with automated primer design
Q40352495HTP-OligoDesigner: An Online Primer Design Tool for High-Throughput Gene Cloning and Site-Directed Mutagenesis.
Q42110135Hepatitis C Virus RNA Real-Time Quantitative RT-PCR Method Based on a New Primer Design Strategy
Q24791204Hepatitis C virus whole genome position weight matrix and robust primer design
Q45871511HindIII polymorphism in carrier detection of hemophilia A in India: a new primer design
Q35017789Homolog-specific PCR primer design for profiling splice variants
Q92665367Human T-cell receptor V gene segment of alpha and beta families: A revised primer design strategy
Q38356128Identification of DREB homologous genes in bread wheat via CODEHOP PCR primer design
Q38353939Identification of a D8S1179 primer binding site mutation and the validation of a primer designed to recover null alleles
Q48073484Identification of conserved sequences for PCR primer design by multiple alignments of dot matrix plots.
Q40420778Improved primer design for PCR-based, site-directed mutagenesis
Q42727622Improved primer design for multiplex PCR analysis of vancomycin-resistant Enterococcus spp
Q64102312Improvement of Rotavirus Genotyping Method by Using the Semi-Nested Multiplex-PCR With New Primer Set
Q48375244Increasing specificity of real time PCR to detect microRNA through primer design and annealing temperature increase
Q96836517Insights into aphid prey consumption by ladybirds: Optimising field sampling methods and primer design for high throughput sequencing
Q36487486Integrating PCR theory and bioinformatics into a research-oriented primer design exercise
Q84267344Intrageneric primer design: Bringing bioinformatics tools to the class
Q42695777Krait: an ultrafast tool for genome-wide survey of microsatellites and primer design
Q33853941Linear-After-The-Exponential (LATE)-PCR: primer design criteria for high yields of specific single-stranded DNA and improved real-time detection
Q34466771MCMC-ODPR: primer design optimization using Markov Chain Monte Carlo sampling
Q35187184MDC-Analyzer: a novel degenerate primer design tool for the construction of intelligent mutagenesis libraries with contiguous sites
Q36240627MPD: multiplex primer design for next-generation targeted sequencing
Q33542864MPprimer: a program for reliable multiplex PCR primer design
Q37272807MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics
Q38792437MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research
Q58579356Medicinal Materials DNA Barcode Database (MMDBD) version 1.5-one-stop solution for storage, BLAST, alignment and primer design
Q29618664MethPrimer: designing primers for methylation PCRs
Q52034957Microarray synthesis through multiple-use PCR primer design.
Q34145969Microsequencing of myosins for PCR primer design
Q74395417Modification of primer design facilitates the use of differential display
Q36977375MultiPrimer: a system for microarray PCR primer design
Q51193654MultiPrimer: software for multiplex primer design.
Q53603426Multiplex PCR primer design for simultaneous detection of multiple pathogens.
Q34064148Multiplex degenerate primer design for targeted whole genome amplification of many viral genomes
Q34974160MutScreener: primer design tool for PCR-direct sequencing
Q34158199Mutagenic primer design for mismatch PCR-RFLP SNP genotyping using a genetic algorithm
Q104618679NGS-PrimerPlex: High-throughput primer design for multiplex polymerase chain reactions
Q46547607Novel Primer Design for cDNA Synthesis and qPCR: TR Priming with RNA Templates of Divergent Quality (RIN 9.5 to 2.2) Outperforms Oligo-dT Priming as well as Random Priming
Q34680710Novel approach to designing primers for identification and distinction of the human pathogenic fungi Coccidioides immitis and Coccidioides posadasii by PCR amplification.
Q30494349Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
Q39269065Olga--oligonucleotide primer design program for the Atari ST.
Q47144071Optimal RNA isolation method and primer design to detect gene knockdown by qPCR when validating Drosophila transgenic RNAi lines
Q38303382Optimal primer design using the novel primer design program: MSPprimer provides accurate methylation analysis of the ATM promoter.
Q36525986Optimization of allele-specific PCR using patient-specific HIV consensus sequences for primer design
Q46565212Optimization of primer design for the detection of variable genomic lesions in cancer
Q33627020Optimus Primer: A PCR enrichment primer design program for next-generation sequencing of human exonic regions
Q43103624PCR Detection of the Bacteroides fragilis Enterotoxin Gene Relies on Robust Primer Design
Q37670872PCR Primer Design for 16S rRNAs for Experimental Horizontal Gene Transfer Test in Escherichia coli
Q64069286PCR effects of melting temperature adjustment of individual primers in degenerate primer pools
Q73906743PCR primer design
Q33530594PCR primer design
Q36977329PCR primer design using statistical modeling
Q35053478PD5: a general purpose library for primer design software.
Q41816412PHUSER (Primer Help for USER): a novel tool for USER fusion primer design
Q67772856PRIMEGEN, a tool for designing primers from multiple alignments
Q33346726PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands
Q73162579PRIMO: A primer design program that applies base quality statistics for automated large-scale DNA sequencing
Q33977362PUNS: transcriptomic- and genomic-in silico PCR for enhanced primer design
Q90443146Parameters for Successful PCR Primer Design
Q53845988PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR.
Q64062253Point mutation detection by economic HRM protocol primer design
Q36614042PolyMarker: A fast polyploid primer design pipeline.
Q54167800Preface. PCR primer design.
Q48623252PrimeArray: genome-scale primer design for DNA-microarray construction
Q59308182PrimedRPA: primer design for recombinase polymerase amplification assays
Q35207959Primer Design Assistant (PDA): A web-based primer design tool
Q50103559Primer Design and Inverse PCR on Yeast Display Antibody Selection Outputs
Q111500814Primer Design and PCR-Parameter Optimization for Cloning the Genes of Taxol Acyltansferase Superfamily
Q110862230Primer Design for Non-Invasive Genetic Identification of West African Threatened Primates
Q91311634Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing
Q31096421Primer Prim'er: a web based server for automated primer design
Q45773277Primer design
Q58618481Primer design and amplification efficiencies are crucial for reliability of quantitative PCR studies of caffeine biosynthetic -methyltransferases in coffee
Q53157484Primer design and in silico PCR test for Ebola virus detection
Q48531259Primer design and marker clustering for multiplex SNP-IT primer extension genotyping assay using statistical modeling
Q34193551Primer design and primer-directed sequencing
Q54353649Primer design and transcript quantification of a highly multiplexed RT-PCR for a nonmodel avian species.
Q48296412Primer design for PCR and sequencing in high-throughput analysis of SNPs.
Q47436267Primer design for PCR reactions in forensic biology
Q44222798Primer design for RT-PCR.
Q48019272Primer design for SNP genotyping based on allele-specific amplification-Application to organ transplantation pharmacogenomics
Q51914080Primer design for Whole Genome Amplification using genetic algorithms.
Q39719898Primer design for a prokaryotic differential display RT-PCR.
Q44040913Primer design for automated DNA sequencing in a core facility
Q38297256Primer design for automated DNA sequencing utilizing T7 DNA polymerase and internal labeling with fluorescein-15-dATP.
Q48045661Primer design for identifying economically important Liriomyza species (Diptera: Agromyzidae) by multiplex PCR.
Q39724242Primer design for large scale sequencing.
Q36977364Primer design for multiplexed genotyping.
Q97536533Primer design for quantitative real-time PCR for the emerging Coronavirus SARS-CoV-2
Q43669121Primer design for specific diagnosis by PCR of highly variable RNA viruses: typing of foot-and-mouth disease virus
Q41670769Primer design for the cloning of immunoglobulin heavy-chain leader-variable regions from mouse hybridoma cells using the PCR.
Q40522865Primer design in fluorescent DNA sequencing
Q93924464Primer design strategies for the targeted amplification of alternatively spliced molecules
Q92917586Primer design strategy for denaturation bubble-mediated strand exchange amplification
Q92184965Primer design to assess bacterial degradation of glyphosate and other phosphonates
Q50439172Primer design using Primer Express® for SYBR Green-based quantitative PCR.
Q48557547Primer design using genetic algorithm
Q53056945Primer design versus PCR bias in methylation independent PCR amplifications.
Q34909624Primer-design for multiplexed genotyping
Q62644371Primer1: Primer Design Web Service for Tetra-Primer ARMS-PCR
Q52707810Primer3_masker: integrating masking of template sequence with primer design software.
Q51706606PrimerCE: designing primers for cloning and gene expression.
Q35541130PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes
Q37181487PrimerHunter: a primer design tool for PCR-based virus subtype identification.
Q41983381PrimerIdent: A web based tool for conserved primer design
Q27350248PrimerMapper: high throughput primer design and graphical assembly for PCR and SNP detection
Q42552471PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome
Q37602153PrimerSuite: A High-Throughput Web-Based Primer Design Program for Multiplex Bisulfite PCR.
Q35686562PrimerView: high-throughput primer design and visualization
Q35914154PrimerZ: streamlined primer design for promoters, exons and human SNPs
Q36239805Primerize-2D: automated primer design for RNA multidimensional chemical mapping
Q45013057QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate
Q33381878QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.
Q45158963Quantitative PCR measurements of the effects of introducing inosines into primers provides guidelines for improved degenerate primer design
Q92406997Quantitative PCR primer design affects quantification of dsRNA-mediated gene knockdown
Q54534296Quantitative real-time PCR primer design, cDNA amplification and sequence analysis from 22 genes mainly associated with lipid metabolism in Pekin (Anas platyrhynchos) and Muscovy (Cairina moschata) ducks.
Q74825972RH mapping of canine TOAST markers: a new strategy for species-specific primer design to prevent amplification of host orthologous gene products especially with similar sizes
Q33957536RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.
Q50439169Rapid and simple method of qPCR primer design.
Q39720084Rational primer design greatly improves differential display-PCR (DD-PCR).
Q46646118Real-time PCR (qPCR) primer design using free online software
Q34898726Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants
Q90182569Retraction notice to 'Point mutation detection by economic HRM protocol primer design '[Biochem. Biophys. Rep. 18 (2019) 100628]
Q34345737SNPbox: a modular software package for large-scale primer design
Q41010564SNPbox: web-based high-throughput primer design from gene to genome
Q36977347SNPbox: web-based high-throughput primer design with an eye for repetitive sequences
Q34758012SSCP primer design based on single-strand DNA structure predicted by a DNA folding program
Q40986056SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation.
Q37727808STITCHER 2.0: primer design for overlapping PCR applications
Q30910406Scrimer: designing primers from transcriptome data.
Q100739922SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files
Q33218315SeqState: primer design and sequence statistics for phylogenetic DNA datasets
Q43840649Set of novel tools for PCR primer design
Q51015316Several concerns about the primer design in the universal molecular beacon real-time PCR assay and its application in HBV DNA detection.
Q41883494Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast
Q51617052Specific PCR product primer design using memetic algorithm.
Q38335643Specific primer design and exonuclease III treatment for the reduction of nonspecific staining in direct in situ PCR.
Q38116458Specific primer design for the polymerase chain reaction.
Q41810337Specificity of methylation assays in cancer research: a guideline for designing primers and probes.
Q58743966Statistical refinement of primer design parameters
Q52959052TGGE-STAR: primer design for melting analysis using PCR gradient gel electrophoresis.
Q92811996The Impact of Primer Design on Amplicon-Based Metagenomic Profiling Accuracy: Detailed Insights into Bifidobacterial Community Structure
Q33447737The Influenza Primer Design Resource: a new tool for translating influenza sequence data into effective diagnostics.
Q52034950The degenerate primer design problem.
Q36120859The degenerate primer design problem: theory and applications
Q33911870The importance of RT-qPCR primer design for the detection of siRNA-mediated mRNA silencing.
Q36273894The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA.
Q36977324The reference point method in primer design
Q54531800The type-2 variant of human cytomegalovirus glycoprotein N (gN-2) is not the rarest in the Chinese population of Taiwan: influence of primer design.
Q41853608ThermoAlign: a genome-aware primer design tool for tiled amplicon resequencing
Q24658319Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: a novel method of primer design for high-fidelity assembly of longer gene sequences
Q34309267URPD: a specific product primer design tool.
Q55113210USER-Derived Cloning Methods and Their Primer Design
Q41780895UniPrime2: a web service providing easier Universal Primer design
Q39089243UniPrime: a workflow-based platform for improved universal primer design
Q36010960UniPrimer: A Web-Based Primer Design Tool for Comparative Analyses of Primate Genomes.
Q42643286Use of a bioinformatic-assisted primer design strategy to establish a new nested PCR-based method for Cryptosporidium.
Q64102202Utility of cfDNA Fragmentation Patterns in Designing the Liquid Biopsy Profiling Panels to Improve Their Sensitivity
Q50782620VizPrimer: a web server for visualized PCR primer design based on known gene structure.
Q49010083Web-based primer design for single nucleotide polymorphism analysis
Q45328553Web-based primer design software for genome-scale genotyping by pyrosequencing
Q71819639[The improvement of a direct DNA sequencing method by devising the primer design: detection of lipoprotein lipase gene aberrations]
Q94248146ampPD: An Automated Primer Design Tool for Highly Multiplexed, Single-Tube Tiled Amplicon PCR for Resequencing of Tumor Samples
Q43944445cry1 genes from Bacillus thuringiensis: specificity determination and implications for primer design
Q43491540hybseek: pathogen primer design tool for diagnostic multi-analyte assays
Q42585792maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences
Q50058736miPrimer: An empirical-based qPCR primer design method for small non-coding microRNA.
Q33902712msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design
Q47102760qPCR primer design revisited
Q57180498sRNAPrimerDB: Comprehensive primer design and search web service for small non-coding RNAs
Q36320316swga: A primer design toolkit for selective whole genome amplification.

Q112143945Primer-BLASThas useP366

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