Crystal structure, SAXS and kinetic mechanism of hyperthermophilic ADP-dependent glucokinase from Thermococcus litoralis reveal a conserved mechanism for catalysis

scientific article

Crystal structure, SAXS and kinetic mechanism of hyperthermophilic ADP-dependent glucokinase from Thermococcus litoralis reveal a conserved mechanism for catalysis is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2013PLoSO...866687R
P356DOI10.1371/JOURNAL.PONE.0066687
P8608Fatcat IDrelease_b7fdfqd2kfecda46puxicf7dlu
P932PMC publication ID3688580
P698PubMed publication ID23818958
P5875ResearchGate publication ID244482612

P50authorFrancisco J. FernandezQ58129098
P2093author name stringAlejandra Herrera-Morande
Jaime Andrés Rivas-Pardo
M Cristina Vega
Victor Castro-Fernandez
Victoria Guixé
P2860cites workDetermination of domain structure of proteins from X-ray solution scatteringQ24537462
A spring-loaded release mechanism regulates domain movement and catalysis in phosphoglycerate kinaseQ24614282
Application of a Theory of Enzyme Specificity to Protein SynthesisQ24620284
MolProbity: all-atom contacts and structure validation for proteins and nucleic acidsQ24684673
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
Induced fit on sugar binding activates ribokinaseQ27619301
Structural basis for the ADP-specificity of a novel glucokinase from a hyperthermophilic archaeonQ27630997
Crystal structure of the ADP-dependent glucokinase from Pyrococcus horikoshii at 2.0-Å resolution: A large conformational change in ADP-dependent glucokinaseQ27639668
Crystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinaseQ27641811
High resolution crystal structures of Mycobacterium tuberculosis adenosine kinase: insights into the mechanism and specificity of this novel prokaryotic enzymeQ27646464
Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMRQ27648890
The lattice as allosteric effector: Structural studies of   - and  -tubulin clarify the role of GTP in microtubule assemblyQ27650226
Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selectionQ27651987
Aromatic stacking between nucleobase and enzyme promotes phosphate ester hydrolysis in dUTPaseQ27663080
XDSQ27860472
Coot: model-building tools for molecular graphicsQ27860505
VMD: visual molecular dynamicsQ27860554
Overview of the CCP4 suite and current developmentsQ27860782
REFMAC5 for the refinement of macromolecular crystal structuresQ27860905
Phasercrystallographic softwareQ27860930
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculationsQ27861014
Scaling and assessment of data qualityQ27861107
The kinetics of enzyme-catalyzed reactions with two or more substrates or productsQ56658044
Crystal structures of Toxoplasma gondii adenosine kinase reveal a novel catalytic mechanism and prodrug binding 1 1Edited by I. A. WilsonQ59178750
Antigen recognition by conformational selectionQ77816644
From “fluctuation fit” to “conformational selection”: Evolution, rediscovery, and integration of a conceptQ82325663
PROMALS3D: a tool for multiple protein sequence and structure alignmentsQ29615726
CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic CoordinatesQ29642130
MultiSeq: unifying sequence and structure data for evolutionary analysisQ33254249
Folding and binding cascades: dynamic landscapes and population shiftsQ33876426
Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound stateQ34245022
Unique sugar metabolism and novel enzymes of hyperthermophilic archaeaQ35648659
Novel energy metabolism in anaerobic hyperthermophilic archaea: a modified Embden-Meyerhof pathwayQ36289800
Conformational selection or induced fit? A critical appraisal of the kinetic mechanismQ36548279
Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanismsQ36837448
The ADP-dependent sugar kinase family: kinetic and evolutionary aspectsQ37528291
Cation-π interaction: its role and relevance in chemistry, biology, and material scienceQ38059241
The cation-π interactionQ38315642
Substrate-induced double sided H-bond network as a means of domain closure in 3-phosphoglycerate kinaseQ42684330
Role of cation-pi interactions to the stability of thermophilic proteinsQ43031853
Catalytic and regulatory roles of divalent metal cations on the phosphoryl-transfer mechanism of ADP-dependent sugar kinases from hyperthermophilic archaeaQ43410679
Crystal structure of an aminoimidazole riboside kinase from Salmonella enterica: implications for the evolution of the ribokinase superfamilyQ45086010
The molecular origin of like-charge arginine-arginine pairing in waterQ46056984
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectThermococcus litoralisQ7783148
crystal structureQ895901
P304page(s)e66687
P577publication date2013-01-01
P1433published inPLOS OneQ564954
P1476titleCrystal structure, SAXS and kinetic mechanism of hyperthermophilic ADP-dependent glucokinase from Thermococcus litoralis reveal a conserved mechanism for catalysis
P478volume8

Reverse relations

cites work (P2860)
Q88984458A Phosphofructokinase Homolog from Pyrobaculum calidifontis Displays Kinase Activity towards Pyrimidine Nucleosides and Ribose 1-Phosphate
Q33925736Both protein dynamics and ligand concentration can shift the binding mechanism between conformational selection and induced fit
Q37217998Conformational selection is a dominant mechanism of ligand binding
Q90381249Crystal Structure of Kluyveromyces lactis Glucokinase (KlGlk1)
Q48202462Crystal structure of ADP-dependent glucokinase from Methanocaldococcus jannaschii in complex with 5-iodotubercidin reveals phosphoryl transfer mechanism
Q55041559Dissecting the functional roles of the conserved NXXE and HXE motifs of the ADP-dependent glucokinase from Thermococcus litoralis.
Q45364968Emergence of pyridoxal phosphorylation through a promiscuous ancestor during the evolution of hydroxymethyl pyrimidine kinases
Q27680217Essential role of conformational selection in ligand binding
Q35743849Identifying sequential substrate binding at the single-molecule level by enzyme mechanical stabilization
Q48095755Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases
Q88764273Structural basis for ADP-dependent glucokinase inhibition by 8-bromo-substituted adenosine nucleotide
Q30090187The Structural and Functional Characterization of Mammalian ADP-dependent Glucokinase.

Search more.