scholarly article | Q13442814 |
P50 | author | Nancy A. Moran | Q11248853 |
Howard Ochman | Q88698176 | ||
Vincent Daubin | Q43198832 | ||
P2093 | author name string | Emmanuelle Lerat | |
P2860 | cites work | Genome sequence of Yersinia pestis KIM | Q22065462 |
Complete genomic sequence of Pasteurella multocida, Pm70 | Q22066329 | ||
Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia | Q22122040 | ||
Comparison of the genomes of two Xanthomonas pathogens with differing host specificities | Q22122346 | ||
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 | Q22122369 | ||
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 | Q22122370 | ||
Genome sequence of Yersinia pestis, the causative agent of plague | Q22122371 | ||
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 | Q22122385 | ||
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS | Q22122392 | ||
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen | Q22122393 | ||
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae | Q22122394 | ||
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis | Q22122395 | ||
Lateral gene transfer and the nature of bacterial innovation | Q22122396 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history | Q24671811 | ||
Molecular archaeology of the Escherichia coli genome | Q24681270 | ||
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria | Q24795892 | ||
The source of laterally transferred genes in bacterial genomes | Q24797149 | ||
The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd | Q27860765 | ||
The frequency distribution of gene family sizes in complete genomes. | Q52243763 | ||
Inferring confidence sets of possibly misspecified gene trees. | Q53675160 | ||
Evolution by gene duplication: an update | Q55879025 | ||
Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content | Q56918343 | ||
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference | Q62472349 | ||
Lateral genomics | Q73303270 | ||
Predictions of gene family distributions in microbial genomes: evolution by gene duplication and modification | Q74290508 | ||
GenBank | Q77374582 | ||
The rapid generation of mutation data matrices from protein sequences | Q27860880 | ||
Origins of highly mosaic mycobacteriophage genomes | Q28198119 | ||
Likelihood-based tests of topologies in phylogenetics | Q28214588 | ||
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea | Q28245344 | ||
Homology in classical and molecular biology | Q28289599 | ||
The balance of driving forces during genome evolution in prokaryotes | Q28775893 | ||
Comparative genomics of the eukaryotes | Q29547504 | ||
Using CLUSTAL for multiple sequence alignments | Q29547794 | ||
Prokaryotic evolution in light of gene transfer | Q29617350 | ||
Genome phylogeny based on gene content | Q29617415 | ||
Distinguishing Homologous from Analogous Proteins | Q29617777 | ||
EMGLib: the enhanced microbial genomes library (update 2000). | Q30825695 | ||
The structure of the protein universe and genome evolution | Q31118789 | ||
Comparative genomics, minimal gene-sets and the last universal common ancestor | Q33199916 | ||
Phage as agents of lateral gene transfer | Q33967977 | ||
Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification | Q34012598 | ||
Horizontal gene transfer: a critical view | Q34220245 | ||
Phylogenetics and the cohesion of bacterial genomes | Q34220940 | ||
Bacteriophages: evolution of the majority | Q34776752 | ||
Lateral gene transfer: when will adolescence end? | Q35583479 | ||
Role of gene duplication in evolution. | Q38730960 | ||
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli | Q40901286 | ||
Eubacterial phylogeny based on translational apparatus proteins | Q44187337 | ||
Scaling law in sizes of protein sequence families: from super-families to orphan genes | Q47864113 | ||
Gene duplication and biased functional retention of paralogs in bacterial genomes. | Q49140799 | ||
Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon. | Q50128814 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 5 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | bacteria | Q10876 |
P304 | page(s) | e130 | |
P577 | publication date | 2005-04-05 | |
P1433 | published in | PLOS Biology | Q1771695 |
P1476 | title | Evolutionary origins of genomic repertoires in bacteria | |
P478 | volume | 3 |
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