Evolutionary origins of genomic repertoires in bacteria

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Evolutionary origins of genomic repertoires in bacteria is …
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scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PBIO.0030130
P3181OpenCitations bibliographic resource ID1834011
P932PMC publication ID1073693
P698PubMed publication ID15799709
P5875ResearchGate publication ID7935738

P50authorNancy A. MoranQ11248853
Howard OchmanQ88698176
Vincent DaubinQ43198832
P2093author name stringEmmanuelle Lerat
P2860cites workGenome sequence of Yersinia pestis KIMQ22065462
Complete genomic sequence of Pasteurella multocida, Pm70Q22066329
Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidiaQ22122040
Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2Q22122369
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18Q22122370
Genome sequence of Yersinia pestis, the causative agent of plagueQ22122371
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7Q22122385
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APSQ22122392
Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogenQ22122393
DNA sequence of both chromosomes of the cholera pathogen Vibrio choleraeQ22122394
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and AnalysisQ22122395
Lateral gene transfer and the nature of bacterial innovationQ22122396
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common historyQ24671811
Molecular archaeology of the Escherichia coli genomeQ24681270
From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-ProteobacteriaQ24795892
The source of laterally transferred genes in bacterial genomesQ24797149
The complete genome sequence of Escherichia coli K-12Q27860542
Whole-genome random sequencing and assembly of Haemophilus influenzae RdQ27860765
The frequency distribution of gene family sizes in complete genomes.Q52243763
Inferring confidence sets of possibly misspecified gene trees.Q53675160
Evolution by gene duplication: an updateQ55879025
Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene ContentQ56918343
Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic InferenceQ62472349
Lateral genomicsQ73303270
Predictions of gene family distributions in microbial genomes: evolution by gene duplication and modificationQ74290508
GenBankQ77374582
The rapid generation of mutation data matrices from protein sequencesQ27860880
Origins of highly mosaic mycobacteriophage genomesQ28198119
Likelihood-based tests of topologies in phylogeneticsQ28214588
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoideaQ28245344
Homology in classical and molecular biologyQ28289599
The balance of driving forces during genome evolution in prokaryotesQ28775893
Comparative genomics of the eukaryotesQ29547504
Using CLUSTAL for multiple sequence alignmentsQ29547794
Prokaryotic evolution in light of gene transferQ29617350
Genome phylogeny based on gene contentQ29617415
Distinguishing Homologous from Analogous ProteinsQ29617777
EMGLib: the enhanced microbial genomes library (update 2000).Q30825695
The structure of the protein universe and genome evolutionQ31118789
Comparative genomics, minimal gene-sets and the last universal common ancestorQ33199916
Phage as agents of lateral gene transferQ33967977
Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplificationQ34012598
Horizontal gene transfer: a critical viewQ34220245
Phylogenetics and the cohesion of bacterial genomesQ34220940
Bacteriophages: evolution of the majorityQ34776752
Lateral gene transfer: when will adolescence end?Q35583479
Role of gene duplication in evolution.Q38730960
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coliQ40901286
Eubacterial phylogeny based on translational apparatus proteinsQ44187337
Scaling law in sizes of protein sequence families: from super-families to orphan genesQ47864113
Gene duplication and biased functional retention of paralogs in bacterial genomes.Q49140799
Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon.Q50128814
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectbacteriaQ10876
P304page(s)e130
P577publication date2005-04-05
P1433published inPLOS BiologyQ1771695
P1476titleEvolutionary origins of genomic repertoires in bacteria
P478volume3

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