The phylogeny of the mammalian heme peroxidases and the evolution of their diverse functions

scientific article

The phylogeny of the mammalian heme peroxidases and the evolution of their diverse functions is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1048110801
P356DOI10.1186/1471-2148-8-101
P3181OpenCitations bibliographic resource ID1819058
P932PMC publication ID2315650
P698PubMed publication ID18371223
P5875ResearchGate publication ID5481854

P50authorBrendan F O'ConnorQ57056604
P2093author name stringMary J O'Connell
Noeleen B Loughran
Ciarán O'Fágáin
P2860cites workMUSCLE: a multiple sequence alignment method with reduced time and space complexityQ21284290
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Preservation of duplicate genes by complementary, degenerative mutationsQ24548042
Rapid and asymmetric divergence of duplicate genes in the human gene coexpression networkQ25255742
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
Codon-substitution models for heterogeneous selection pressure at amino acid sitesQ27473194
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computingQ27860512
SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modelingQ27860614
The SWISS-MODEL workspace: a web-based environment for protein structure homology modellingQ27860637
The rapid generation of mutation data matrices from protein sequencesQ27860880
PAML: a program package for phylogenetic analysis by maximum likelihoodQ27861096
Molecular phylogenetics and the origins of placental mammalsQ28201892
Structural and functional aspects of thyroid peroxidaseQ28267047
Human myeloperoxidase and thyroid peroxidase, two enzymes with separate and distinct physiological functions, are evolutionarily related members of the same gene familyQ28281160
Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesisQ28282820
Bayes empirical bayes inference of amino acid sites under positive selectionQ29547692
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope geneQ29617599
Two novel mutations in the thyroid peroxidase gene with goitrous hypothyroidismQ81473047
The pattern of evolution of smaller-scale gene duplicates in mammalian genomes is more consistent with neo- than subfunctionalisationQ81489174
The probability of duplicate gene preservation by subfunctionalizationQ29618530
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.Q30330085
Myeloperoxidase and its contributory role in inflammatory vascular disease.Q30352941
Integrating mutation data and structural analysis of the TP53 tumor-suppressor proteinQ30670267
Evolution after gene duplication: models, mechanisms, sequences, systems, and organismsQ33250026
Tracking the connection between evolutionary and functional shifts using the fungal lipase/feruloyl esterase A familyQ33263048
MyeloperoxidaseQ33750861
Active site structure and catalytic mechanisms of human peroxidasesQ33991456
Heme to protein linkages in mammalian peroxidases: impact on spectroscopic, redox and catalytic propertiesQ34004418
Molecular phylogeny: pitfalls and progressQ34017158
The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than EcdysozoaQ34392765
Role of positive selection in the retention of duplicate genes in mammalian genomesQ34479062
PeroxiBase: the peroxidase databaseQ34633664
MultiPhyl: a high-throughput phylogenomics webserver using distributed computingQ35914132
Role of eosinophil peroxidase in host defense and disease pathologyQ36317601
Functional redundancy of the nuclear factor kappa B inhibitors I kappa B alpha and I kappa B betaQ36401827
An examination of the generation-time effect on molecular evolutionQ36667239
The role of the propeptide for processing and sorting of human myeloperoxidaseQ41059058
An evaluation of the molecular clock hypothesis using mammalian DNA sequencesQ41385864
Prokaryotic origins of the non-animal peroxidase superfamily and organelle-mediated transmission to eukaryotesQ42169814
Dog as an outgroup to human and mouseQ42840266
Effect of physical and chemical methods of homogenization on inflammatory mediators in sputum of asthma patientsQ43604772
Novel mutations of the thyroid peroxidase gene in patients with permanent congenital hypothyroidismQ43646497
Vertebrate phylogenomics: reconciled trees and gene duplicationsQ47575884
Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogeniesQ47714495
MPO and APOEepsilon4 polymorphisms interact to increase risk for AD in Finnish malesQ47812698
The eosinophil peroxidase gene forms a cluster with the genes for myeloperoxidase and lactoperoxidase on human chromosome 17.Q47858236
Increasing diversity of human thyroperoxidase generated by alternative splicing. Characterized by molecular cloning of new transcripts with single- and multispliced mRNAs.Q48271969
GeneTree: comparing gene and species phylogenies using reconciled treesQ48764903
TOPD/FMTS: a new software to compare phylogenetic trees.Q51916375
Evolution of genetic redundancyQ52193461
Serum eosinophil peroxidase (EPO) levels in asthmatic patients.Q53360515
Myeloperoxidase: contribution to the microbicidal activity of intact leukocytes.Q53743142
Mutation screening of the thyroid peroxidase gene in a cohort of 55 Portuguese patients with congenital hypothyroidismQ58278236
Myeloperoxidase (MPO) gene mutation in hereditary MPO deficiencyQ72327628
The evolutionary conservation of the mammalian peroxidase genesQ72992469
Molecular analysis of mutated thyroid peroxidase detected in patients with total iodide organification defectsQ73047846
Statistical methods for testing functional divergence after gene duplicationQ73289812
The genetics of disulfide bond metabolismQ77936221
Gamma chain receptor interleukins: evidence for positive selection driving the evolution of cell-to-cell communicators in the mammalian immune systemQ81312032
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
P304page(s)101
P577publication date2008-01-01
P1433published inBMC Evolutionary BiologyQ13418959
P1476titleThe phylogeny of the mammalian heme peroxidases and the evolution of their diverse functions
P478volume8

Reverse relations

cites work (P2860)
Q24595354A robust and extracellular heme-containing peroxidase from Thermobifida fusca as prototype of a bacterial peroxidase superfamily
Q90361749Amyloid β and free heme: bloody new insights into the pathogenesis of Alzheimer's disease
Q30389018Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.
Q91988288Bioinformatic analysis of eosinophil activity and its implications for model and target species
Q34334316Colon cancer associated genes exhibit signatures of positive selection at functionally significant positions
Q82594557Comparative analysis of vertebrate PEPT1 and PEPT2 genes
Q48362724Enhancing hypothiocyanite production by lactoperoxidase - mechanism and chemical properties of promotors
Q51585302Fast and Specific Assessment of the Halogenating Peroxidase Activity in Leukocyte-enriched Blood Samples.
Q34166052Functional consequence of positive selection revealed through rational mutagenesis of human myeloperoxidase
Q37691508Hydrogen sulfide activation in hemeproteins: the sulfheme scenario
Q37986630In vitro production of plant peroxidases--a review.
Q36011005Independent Evolution of Six Families of Halogenating Enzymes
Q28648029Independent evolution of four heme peroxidase superfamilies
Q34171047Molecular evolution of the deuterolysin (M35) family genes in Coccidioides
Q28748681Positive selection neighboring functionally essential sites and disease-implicated regions of mammalian reproductive proteins
Q30617373Sensory biology. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor.
Q36201925The fluorescein-derived dye aminophenyl fluorescein is a suitable tool to detect hypobromous acid (HOBr)-producing activity in eosinophils
Q27666280The two tryptophans of β2-microglobulin have distinct roles in function and folding and might represent two independent responses to evolutionary pressure

Search more.