Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

scientific article published in September 2012

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1009317025
P356DOI10.1038/NG.2369
P3181OpenCitations bibliographic resource ID927511
P932PMC publication ID3442231
P698PubMed publication ID22863732
P5875ResearchGate publication ID230618809

P50authorJeremy FarrarQ15967402
Gordon DouganQ15994408
Julian ParkhillQ16773696
Andrew KitchenQ28152061
Edward C. HolmesQ28152069
Dong Wook KimQ55404685
Kat HoltQ56865567
Stephen BakerQ88026329
Derek J PickardQ114309481
John CoiaQ114425449
Seon Young ChoiQ114718419
François-Xavier WeillQ30093135
Vartul SangalQ37611143
Nicholas ThomsonQ42305770
Derek J BrownQ51170964
P2093author name stringJun Yu
Wanderley D da Silveira
Su Hee Kim
P2860cites workThe RAST Server: rapid annotations using subsystems technologyQ21263157
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysenteryQ22065981
Antibiotic therapy for Shigella dysenteryQ24236428
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversityQ24569659
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristicsQ24652261
Fast and accurate short read alignment with Burrows-Wheeler transformQ24653853
Velvet: algorithms for de novo short read assembly using de Bruijn graphsQ24657623
Versatile and open software for comparing large genomesQ24807126
EMBOSS: the European Molecular Biology Open Software SuiteQ27860491
BEAST: Bayesian evolutionary analysis by sampling treesQ27860723
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsQ27860746
The Sequence Alignment/Map format and SAMtoolsQ27860966
On the serology of Plesiomonas shigelloidesQ67369639
Age-Specific Prevalence of Serum Antibodies to the Invasion Plasmid and Lipopolysaccharide Antigens of Shigella Species in Chilean and North American PopulationsQ68159705
Is protection against shigellosis induced by natural infection with Plesiomonas shigelloides?Q72678992
Acanthamoeba castellanii an environmental host for Shigella dysenteriae and Shigella sonneiQ81800597
APE: Analyses of Phylogenetics and Evolution in R languageQ29546513
Evolution of MRSA during hospital transmission and intercontinental spreadQ29615141
Rapid pneumococcal evolution in response to clinical interventionsQ29616646
Evidence for several waves of global transmission in the seventh cholera pandemicQ30406370
Genetic relatedness among isolates of Shigella sonnei carrying class 2 integrons in Tehran, Iran, 2002-2003.Q30479743
Identifying currents in the gene pool for bacterial populations using an integrative approachQ33491540
A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentationQ33518017
Comparison of O-antigen gene clusters of Escherichia coli (Shigella) sonnei and Plesiomonas shigelloides O17: sonnei gained its current plasmid-borne O-antigen genes from P. shigelloides in a recent eventQ33593386
Global burden of Shigella infections: implications for vaccine development and implementation of control strategiesQ33749510
Free-living amoebae protecting Legionella in water: the tip of an iceberg?Q33755570
A multi-center randomized trial to assess the efficacy of gatifloxacin versus ciprofloxacin for the treatment of shigellosis in Vietnamese childrenQ33988931
Microorganisms resistant to free-living amoebaeQ35745838
Shigella sonnei plasmids: evidence that a large plasmid is necessary for virulence.Q36428530
Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 yearsQ37073636
High-throughput sequencing provides insights into genome variation and evolution in Salmonella TyphiQ37119288
Inactivated and subunit vaccines to prevent shigellosisQ37640115
Treatment of bacillary dysentery in Vietnamese children: two doses of ofloxacin versus 5-days nalidixic acidQ39561990
CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection.Q41894905
Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertaintyQ42633683
rRNA gene restriction patterns and biotypes of Shigella sonneiQ43083458
Reduction of transmission of shigellosis by control of houseflies (Musca domestica)Q43310938
An outbreak of shigellosis in a child care centreQ43315162
Outbreaks of Shigella sonnei infections in Denmark and Australia linked to consumption of imported raw baby cornQ46169105
Inoculum size in shigellosis and implications for expected mode of transmissionQ47172816
Acanthamoeba: could it be an environmental host of Shigella?Q51132396
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
Shigella sonneiQ6382438
P304page(s)1056-9
P577publication date2012-09-01
P1433published inNature GeneticsQ976454
P1476titleShigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
P478volume44

Reverse relations

cites work (P2860)
Q57929967A Novel Proteome Microarray Discriminates Targets of Human Antibody Reactivity following Oral Vaccination and Experimental Challenge
Q90334292A Quest of Great Importance-Developing a Broad Spectrum Escherichia coli Phage Collection
Q39051351A brief primer on genomic epidemiology: lessons learned from Mycobacterium tuberculosis.
Q46202332ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
Q35202321An O antigen capsule modulates bacterial pathogenesis in Shigella sonnei
Q92822336An Oral Inoculation Infant Rabbit Model for Shigella Infection
Q88607262An Outbreak of Streptococcus pyogenes in a Mental Health Facility: Advantage of Well-Timed Whole-Genome Sequencing Over emm Typing
Q37658037Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157:H7 strains causing severe human disease in the UK.
Q37716144Automated reconstruction of whole-genome phylogenies from short-sequence reads
Q36682033Bacteriophage application to control the contaminated water with Shigella
Q62801921Bayesian inference of ancestral dates on bacterial phylogenetic trees
Q30614820Beginner's guide to comparative bacterial genome analysis using next-generation sequence data
Q34712010Changing emergence of Shigella sero-groups in Bangladesh: observation from four different diarrheal disease hospitals
Q28537719Changing trends in the prevalence of Shigella species: emergence of multi-drug resistant Shigella sonnei biotype g in Bangladesh
Q92764973Characterization of Carbapenemase-Producing Klebsiella oxytoca in Spain, 2016-2017
Q34807657Choosing a benchtop sequencing machine to characterise Helicobacter pylori genomes
Q36830876Chromosome painting in silico in a bacterial species reveals fine population structure
Q42584791Ciprofloxacin-Resistant Shigella sonnei Associated with Travel to India
Q60231011Closed Genome and Comparative Phylogenetic Analysis of the Clinical Multidrug Resistant Shigella sonnei Strain 866
Q92784550Commensal Escherichia coli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei
Q33736542Comparative Genomic and Phylogenetic Analysis of a Shiga Toxin Producing Shigella sonnei (STSS) Strain.
Q33405438Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen
Q38305664Comparison of resistance to third-generation cephalosporins in Shigella between Europe-America and Asia-Africa from 1998 to 2012.
Q58784868Computational Methods in Microbial Population Genomics
Q35115261Concordance and discordance of sequence survey methods for molecular epidemiology
Q91801457Consensus Report on Shigella Controlled Human Infection Model: Conduct of Studies
Q59138059Cross-Protective Whole-Cell Vaccine With a Truncated O-Polysaccharide Chain
Q98568647Cryptic speciation of a pelagic Roseobacter population varying at a few thousand nucleotide sites
Q40486636Deletion of toxin-antitoxin systems in the evolution of Shigella sonnei as a host-adapted pathogen
Q90910827Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei
Q42143923Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants
Q59135001Enhanced Biofilm Formation and Membrane Vesicle Release by Escherichia coli Expressing a Commonly Occurring Plasmid Gene, kil
Q41934016Enteric Infections Circulating during Hajj Seasons, 2011-2013
Q90183370Evaluation of in vitro and in vivo antibiotic efficacy against a novel bioluminescent Shigella flexneri
Q35045573Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm
Q30243898Evolution, genomics and epidemiology of Pseudomonas syringae: Challenges in Bacterial Molecular Plant Pathology.
Q38102667Explaining microbial phenotypes on a genomic scale: GWAS for microbes
Q35599331Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.
Q33866995Failure of phylogeny inferred from multilocus sequence typing to represent bacterial phylogeny.
Q38872307Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1.
Q28536866Genome analysis of a transmissible lineage of pseudomonas aeruginosa reveals pathoadaptive mutations and distinct evolutionary paths of hypermutators
Q30277011Genome diversity of Shigella boydii
Q60398154Genome sequencing reveals how Shigella sonnei spread around the world
Q38872317Genome-scale rates of evolutionary change in bacteria.
Q89635013Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity
Q58493506Genomic Analysis of Bacterial Outbreaks
Q39013713Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks
Q34916668Genomic analysis of the Kiwifruit pathogen Pseudomonas syringae pv. actinidiae provides insight into the origins of an emergent plant disease
Q33686643Genomic analysis of the emergence of 20th century epidemic dysentery.
Q30378240Genomic content typifying a prevalent clade of bovine mastitis-associated Escherichia coli.
Q55189235Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance.
Q58002775Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens
Q37105659Genomic insights to control the emergence of vancomycin-resistant enterococci
Q36998465Genomics and outbreak investigation: from sequence to consequence
Q35046422Genomics, the origins of agriculture, and our changing microbe-scape: time to revisit some old tales and tell some new ones
Q52744592Geraniol as a novel antivirulence agent against bacillary dysentery-causing Shigella sonnei.
Q37711903Global dissemination of a multidrug resistant Escherichia coli clone
Q92153020Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198
Q30423042Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.
Q39306485Global phylogeography and evolutionary history of Shigella dysenteriae type 1.
Q35844611HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes
Q38994606Hierarchical sets: analyzing pangenome structure through scalable set visualizations
Q34114326High-throughput sequencing for the study of bacterial pathogen biology
Q35407437Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution
Q37658156Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan
Q37129879Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics.
Q64062956Maintenance of the virulence plasmid in Shigella flexneri is influenced by Lon and two functional partitioning systems
Q89810569Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Q47931137Microbial sequence typing in the genomic era.
Q57922815Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel
Q37650400Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements
Q30368857Molecular characterization of Shigella spp. from patients in Gabon 2011-2013.
Q92182888Molecular epidemiology and intercontinental spread of cholera
Q37611869Multi-locus sequence type analysis of Shigellas pp. isolates from Tehran, Iran
Q36264288Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa
Q37383340Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
Q30578890OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella
Q30396026Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster
Q55241660Out of Asia: the independent rise and global spread of fluoroquinolone-resistant Shigella.
Q28662322Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Q36477621Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation
Q97568181Phylogenetic Characterization Reveals Prevalent Shigella flexneri ST100 Clone in Beijing, China, 2005 to 2018
Q37658088Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
Q35626884Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
Q64987659Plasmids of Shigella flexneri serotype 1c strain Y394 provide advantages to bacteria in the host.
Q42421799Rapid Genotyping of Shigella sonnei by Use of Multiplex High-Resolution Melting
Q35053527Rapid diagnosis of diarrhea caused by Shigella sonnei using dipsticks; comparison of rectal swabs, direct stool and stool culture
Q35076491Rapid single-colony whole-genome sequencing of bacterial pathogens
Q38376613Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shigella sonnei with either Increased Virulence or Fluoroquinolone Resistance.
Q34375210Recent advances in understanding enteric pathogenic Escherichia coli.
Q57945192Recent insights into Shigella
Q35301668Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates.
Q64072456Relation of childhood diarrheal morbidity with the type of tube well used and associated factors of diarrhea in rural Bangladesh site of the Global Enteric Multicenter Study
Q39439926Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
Q30387375Retracted: Metagenomic Human Repiratory Air in a Hospital Environment
Q30591434Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.
Q34673480Revising a personal genome by comparing and combining data from two different sequencing platforms
Q34544298SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
Q30981884Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data
Q36935306Shigella Antimicrobial Drug Resistance Mechanisms, 2004-2014.
Q26752367Shigella Diversity and Changing Landscape: Insights for the Twenty-First Century
Q92058286Shigella sonnei O-Antigen Inhibits Internalization, Vacuole Escape, and Inflammasome Activation
Q91918181Shigella sonnei infection of zebrafish reveals that O-antigen mediates neutrophil tolerance and dysentery incidence
Q56383780Shigellosis
Q21266702Short read sequence typing (SRST): multi-locus sequence types from short reads
Q37658221Short-term evolution of Shiga toxin-producing Escherichia coli O157:H7 between two food-borne outbreaks.
Q36092436South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study
Q35909689Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri
Q35941597The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography
Q40946024The Multivalent Adhesion Molecule SSO1327 plays a key role in Shigella sonnei pathogenesis
Q26825840The Rising Dominance of Shigella sonnei: An Intercontinental Shift in the Etiology of Bacillary Dysentery
Q84896604The emergence and spread of dysentery
Q40299603The evolutionary path to extraintestinal pathogenic, drug-resistant Escherichia coli is marked by drastic reduction in detectable recombination within the core genome
Q30597282The extant World War 1 dysentery bacillus NCTC1: a genomic analysis
Q38753453The genomic signatures of Shigella evolution, adaptation and geographical spread
Q90101011The higher prevalence of extended spectrum beta-lactamases among Escherichia coli ST131 in Southeast Asia is driven by expansion of a single, locally prevalent subclone
Q36547740The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants
Q28550170Three New Escherichia coli Phages from the Human Gut Show Promising Potential for Phage Therapy
Q34799185Tool for rapid annotation of microbial SNPs (TRAMS): a simple program for rapid annotation of genomic variation in prokaryotes.
Q37256091Tracking the establishment of local endemic populations of an emergent enteric pathogen
Q36974199Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen Streptococcus pyogenes
Q34082875Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever
Q28597463Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities
Q57946228Two novel mutations in among isolated from Jiangsu Province of China, 2016
Q64991364Use of whole genome sequencing in surveillance for antimicrobial-resistant Shigella sonnei infections acquired from domestic and international sources.
Q52625300Use of zebrafish to study Shigella infection.
Q26824128Vaccines for low-income countries
Q34569215WGS Analysis and Interpretation in Clinical and Public Health Microbiology Laboratories: What Are the Requirements and How Do Existing Tools Compare?
Q50114269When are pathogen genome sequences informative of transmission events?
Q41263122Whole genome analysis to detect potential vaccine-induced changes on Shigella sonnei genome.
Q36340503Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.
Q51782899Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel.
Q33833227Widespread antibiotic resistance of diarrheagenic Escherichia coli and Shigella species

Search more.