Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

scientific article

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/nar/SunCLALPSAEGW11
P356DOI10.1093/NAR/GKQ1102
P3181OpenCitations bibliographic resource ID921287
P932PMC publication ID3013694
P698PubMed publication ID21045053
P5875ResearchGate publication ID47660984

P50authorKaren I StocksQ56588173
Ilkay AltintasQ61863183
Weizhong LiQ30303443
John WooleyQ30417030
Jeffrey GretheQ42609504
P2093author name stringJing Chen
Shulei Sun
Mark Ellisman
Eric E Allen
Abel Lin
Steve Peltier
P2860cites workScientific workflow management and the Kepler systemQ57566453
A primer on metagenomicsQ21145346
CAMERA: a community resource for metagenomicsQ21145892
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomesQ21284200
KEGG for representation and analysis of molecular networks involving diseases and drugsQ24644514
The Pfam protein families databaseQ24644670
Database resources of the National Center for Biotechnology InformationQ24644775
MEGAN analysis of metagenomic dataQ24673516
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBQ24685829
A genomic perspective on protein familiesQ27860913
The minimum information about a genome sequence (MIGS) specificationQ28279450
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomyQ29547619
IMG/M: a data management and analysis system for metagenomesQ31132895
Analysis and comparison of very large metagenomes with fast clustering and functional annotationQ33513330
Artificial and natural duplicates in pyrosequencing reads of metagenomic dataQ33553912
The Gene Ontology in 2010: extensions and refinementsQ33600840
Metagenomics: Facts and Artifacts, and Computational Challenges*Q34002492
Identification of ribosomal RNA genes in metagenomic fragmentsQ43134282
P275copyright licenseCreative Commons Attribution-NonCommercial 2.5 GenericQ19113746
P6216copyright statuscopyrightedQ50423863
P433issueDatabase issue
P407language of work or nameEnglishQ1860
P921main subjectmicrobial ecologyQ3054637
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)D546-51
P577publication date2011-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleCommunity cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
P478volume39

Reverse relations

cites work (P2860)
Q36020644"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Q37406248A metagenomic analysis displays the diverse microbial community of a vermicomposting system in Uganda
Q33801723A microarray for assessing transcription from pelagic marine microbial taxa
Q58699080A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling
Q34501445A novel group of diverse Polinton-like viruses discovered by metagenome analysis
Q35552991A novel sister clade to the enterobacteria microviruses (family Microviridae) identified in methane seep sediments
Q21203750A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses
Q36221216Acanthamoeba polyphaga mimivirus virophage seroconversion in travelers returning from Laos
Q38303659Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities
Q30662233An ancestral bacterial division system is widespread in eukaryotic mitochondria.
Q27028042An introduction to the analysis of shotgun metagenomic data
Q31006324Analysis of metagenomic data reveals common features of halophilic viral communities across continents
Q33659736Analysis of plant microbe interactions in the era of next generation sequencing technologies
Q46910322Arsenic hypertolerance in the protist Euglena mutabilis is mediated by specific transporters and functional integrity maintenance mechanisms
Q26800057Assessing the global phylum level diversity within the bacterial domain: A review
Q37389486Bacterial Human Virulence Genes across Diverse Habitats As Assessed by In silico Analysis of Environmental Metagenomes
Q47136268Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere
Q87686345Big Data Provenance: Challenges, State of the Art and Opportunities
Q35137569Bioinformatic approaches reveal metagenomic characterization of soil microbial community
Q34691984Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities
Q29616664CD-HIT: accelerated for clustering the next-generation sequencing data
Q36271337COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets
Q46483585Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the 'anaerobic' termite gut spirochete Treponema primitia
Q33751781Characterisation of the canine faecal virome in healthy dogs and dogs with acute diarrhoea using shotgun metagenomics.
Q33801728Classification and quantification of bacteriophage taxa in human gut metagenomes
Q42197975Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions.
Q34256303Comparative (meta)genomic analysis and ecological profiling of human gut-specific bacteriophage φB124-14.
Q34321194Comparative genomics defines the core genome of the growing N4-like phage genus and identifies N4-like Roseophage specific genes
Q47214208Comparative genomics highlights symbiotic capacities and high metabolic flexibility of the marine genus Pseudovibrio
Q46467507Comparative genomics of Paracoccus sp. SM22M-07 isolated from coral mucus: insights into bacteria-host interactions
Q33753203Comparative transcriptome analysis of four prymnesiophyte algae
Q38961991Computational operon prediction in whole-genomes and metagenomes
Q35540889Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics
Q34470554Control of bacterial exoelectrogenesis by c-AMP-GMP.
Q34410918Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective
Q33831102De novo transcriptomes of a mixotrophic and a heterotrophic ciliate from marine plankton
Q30578739De-MetaST-BLAST: a tool for the validation of degenerate primer sets and data mining of publicly available metagenomes
Q28601705Deciphering ocean carbon in a changing world
Q39148546Depth-stratified functional and taxonomic niche specialization in the 'core' and 'flexible' Pacific Ocean Virome
Q35554045Detection of a key Hg methylation gene, hgcA, in wetland soils
Q39438117Direct 16S rRNA-seq from bacterial communities: a PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each taxon
Q26752366Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type-I Polyketide Synthases Derived from Marine Microbiomes
Q37413711Distribution and Classification of Serine β-Lactamases in Brazilian Hospital Sewage and Other Environmental Metagenomes Deposited in Public Databases.
Q28658812Diverse capacity for 2-methylhopanoid production correlates with a specific ecological niche
Q30588662Diversity of virophages in metagenomic data sets
Q34272003Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea
Q30685254EBI metagenomics--a new resource for the analysis and archiving of metagenomic data
Q35861643Estimating population diversity with CatchAll.
Q35832785Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.
Q34241426Experimental and analytical tools for studying the human microbiome
Q34663016Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
Q35019692FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
Q52310730Flexible metagenome analysis using the MGX framework.
Q34330455Functional assignment of metagenomic data: challenges and applications
Q27321810Functional biogeography of ocean microbes revealed through non-negative matrix factorization
Q33694702Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes
Q59798427GLOSSary: the GLobal Ocean 16S subunit web accessible resource
Q37110999Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
Q45423162Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards
Q37049478Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
Q39508852Genome sequence of Coxiella burnetii 109, a doxycycline-resistant clinical isolate
Q37186442Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences.
Q34692000Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium
Q36864602Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress.
Q36676969Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins
Q36378824Genomic potential for arsenic efflux and methylation varies among global Prochlorococcus populations
Q36171150Global biogeography of SAR11 marine bacteria
Q34366529Going viral: next-generation sequencing applied to phage populations in the human gut.
Q39634425HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts
Q37970704Insights into antibiotic resistance through metagenomic approaches.
Q30661663Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae
Q35638668Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations
Q34289500Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans
Q39911705Lacustrine Nostoc (Nostocales) and associated microbiome generate a new type of modern clotted microbialite
Q34961243Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians
Q34436309MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data
Q64091894MNEMONIC: MetageNomic Experiment Mining to create an OTU Network of Inhabitant Correlations
Q34452175MOCAT: a metagenomics assembly and gene prediction toolkit
Q41774045Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades
Q52567289Maser: one-stop platform for NGS big data from analysis to visualization.
Q28743031Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010
Q38778269Meiotic genes and sexual reproduction in the green algal class Trebouxiophyceae (Chlorophyta).
Q37147667Meta4: a web application for sharing and annotating metagenomic gene predictions using web services
Q34314953MetaMicrobesOnline: phylogenomic analysis of microbial communities
Q36384599MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison
Q36477719Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton
Q40594225Metabolic reprogramming by viruses in the sunlit and dark ocean
Q28817867Metabolomic and Metagenomic Analysis of Two Crude Oil Production Pipelines Experiencing Differential Rates of Corrosion
Q33808936Metabolomic profiling and genomic study of a marine sponge-associated Streptomyces sp.
Q34315387Metagenome analyses of corroded concrete wastewater pipe biofilms reveal a complex microbial system
Q37309147Metagenome sequencing of prokaryotic microbiota from two hypersaline ponds of a marine saltern in santa pola, Spain.
Q56795158Metagenomic Analysis of the Saliva Microbiome with Merlin
Q34316043Metagenomic analyses of drinking water receiving different disinfection treatments
Q38861366Metagenomic analysis of the viral community in Namib Desert hypoliths
Q26823389Metagenomic analysis: the challenge of the data bonanza
Q38486274Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments
Q34631305Metagenomic insights into the dominant Fe(II) oxidizing Zetaproteobacteria from an iron mat at Lō´ihi, Hawai´l
Q37583750Metagenomic sequence of prokaryotic microbiota from an intermediate-salinity pond of a saltern in isla cristina, Spain.
Q21195892Metagenomics - a guide from sampling to data analysis
Q35054897Metagenomics and the protein universe
Q26776163Metagenomics: Retrospect and Prospects in High Throughput Age
Q28649823Metatranscriptomic analysis of diminutive Thiomargarita-like bacteria ("Candidatus Thiopilula" spp.) from abyssal cold seeps of the Barbados Accretionary Prism
Q34769147Metatranscriptomic signature of exogenous polyamine utilization by coastal bacterioplankton
Q35103060Metazen - metadata capture for metagenomes
Q35565375Microbial Consortium Associated with the Antarctic Marine Ciliate Euplotes focardii: An Investigation from Genomic Sequences
Q38255274Microbial genome-enabled insights into plant-microorganism interactions
Q31137261Microbial life in a fjord: metagenomic analysis of a microbial mat in Chilean patagonia
Q34175068Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity
Q35468435Misannotations of rRNA can now generate 90% false positive protein matches in metatranscriptomic studies.
Q52347842Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism.
Q35109643MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
Q39942272New biosynthetic pathway for pink pigments from uncultured oceanic viruses
Q28314889New classes of self-cleaving ribozymes revealed by comparative genomics analysis
Q57898440New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data
Q40438911Newly isolated Nodularia phage influences cyanobacterial community dynamics
Q35646840Novel N4 Bacteriophages Prevail in the Cold Biosphere
Q42367741Novel archaeal thermostable cellulases from an oil reservoir metagenome
Q33669370Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae
Q34377238NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.
Q34238523PHYRN: a robust method for phylogenetic analysis of highly divergent sequences
Q33916703Phage encoded H-NS: a potential achilles heel in the bacterial defence system
Q35209312Phage-bacteria network analysis and its implication for the understanding of coral disease
Q34049653Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
Q35106069Polyphasic analysis of a middle ages coprolite microbiota, Belgium
Q30859209Pooled assembly of marine metagenomic datasets: enriching annotation through chimerism
Q34944670Potential role of viruses in white plague coral disease
Q35631198ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
Q43021216Prokaryotic taxonomic and metabolic diversity of an intermediate salinity hypersaline habitat assessed by metagenomics
Q36103045Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses
Q35198333Quadruplex formation is necessary for stable PNA invasion into duplex DNA of BCL2 promoter region
Q46251995Resources and tools for the high-throughput, multi-omic study of intestinal microbiota
Q34506390Reticulamoeba is a long-branched Granofilosean (Cercozoa) that is missing from sequence databases
Q28300536Riboswitches in eubacteria sense the second messenger c-di-AMP
Q30373513SANSparallel: interactive homology search against Uniprot.
Q34554183SOAs for Scientific Applications: Experiences and Challenges
Q34444444Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.
Q33858559Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
Q31107433Soil microbial diversity in the vicinity of desert shrubs
Q30407734Species matter: the role of competition in the assembly of congeneric bacteria
Q34149770Statistical approach of functional profiling for a microbial community
Q64903740Stoichio-Metagenomics of Ocean Waters: A Molecular Evolution Approach to Trace the Dynamics of Nitrogen Conservation in Natural Communities.
Q34768900Study of the viral and microbial communities associated with Crohn's disease: a metagenomic approach.
Q28651699Targeted diversity generation by intraterrestrial archaea and archaeal viruses
Q55511507Taxon Richness of "Megaviridae" Exceeds those of Bacteria and Archaea in the Ocean.
Q38466838Taxonomic binning of metagenome samples generated by next-generation sequencing technologies
Q42082113The DNA60IFX contest
Q28743400The Genomic Standards Consortium
Q30833097The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
Q52576102The Resistome of Low-Impacted Marine Environments Is Composed by Distant Metallo-β-Lactamases Homologs.
Q60922201The Transcriptional Cycle Is Suited to Daytime N Fixation in the Unicellular Cyanobacterium " Atelocyanobacterium thalassa" (UCYN-A)
Q41761360The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution
Q92085440The diversity and abundance of fungi and bacteria on the healthy and dandruff affected human scalp
Q34985551The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns
Q28082442The role of biofilms as environmental reservoirs of antibiotic resistance
Q57255886The unseen world: environmental microbial sequencing and identification methods for ecologists
Q37704514The use of metagenomic approaches to analyze changes in microbial communities
Q34512304The yjdF riboswitch candidate regulates gene expression by binding diverse azaaromatic compounds
Q34009100TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
Q35545594Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange.
Q40215737Two subpopulations of Crocosphaera watsonii have distinct distributions in the North and South Pacific
Q36419104Ultrafast clustering algorithms for metagenomic sequence analysis
Q34335127Unique nucleocytoplasmic dsDNA and +ssRNA viruses are associated with the dinoflagellate endosymbionts of corals
Q34662022Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin.
Q42200213Unveiling viral-host interactions within the 'microbial dark matter'.
Q42572597Utilization of heme as an iron source by marine Alphaproteobacteria in the Roseobacter clade
Q36209712Viral Metagenomic Analysis Displays the Co-Infection Situation in Healthy and PMWS Affected Pigs
Q34264184Viral clones from the GOS expedition with an unusual photosystem-I gene cassette organization
Q35137256Viral communities associated with human pericardial fluids in idiopathic pericarditis
Q36338645Viral metagenomic analysis of bushpigs (Potamochoerus larvatus) in Uganda identifies novel variants of Porcine parvovirus 4 and Torque teno sus virus 1 and 2
Q37949696Viral metagenomics as an emerging and powerful tool in veterinary medicine.
Q55426934Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses.
Q26776066Web Resources for Metagenomics Studies
Q34029970Widespread genetic switches and toxicity resistance proteins for fluoride
Q34091751amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
Q34798602pico-PLAZA, a genome database of microbial photosynthetic eukaryotes
Q33733643pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

Search more.