| scholarly article | Q13442814 |
| P50 | author | Yoshihide Hayashizaki | Q15055173 |
| Piero Carninci | Q15989751 | ||
| Alistair Forrest | Q16212377 | ||
| Trey Ideker | Q16335202 | ||
| Erik van Nimwegen | Q16914877 | ||
| Sarah Teichmann | Q19501099 | ||
| Julian Gough | Q19718519 | ||
| Timo Lassmann | Q30303513 | ||
| Vladimir B. Bajic | Q30347500 | ||
| Carsten O Daub | Q43120142 | ||
| Aleksandar Radovanovic | Q43371015 | ||
| David A Hume | Q49872722 | ||
| Altuna Akalin | Q56614722 | ||
| Jung Hoon Han | Q57489836 | ||
| Jesper Tegnér | Q76594920 | ||
| Carlo V Cannistraci | Q88985344 | ||
| Ariel E Schwartz | Q89971259 | ||
| Harukazu Suzuki | Q91142203 | ||
| Shiro Fukuda | Q97530390 | ||
| Ryoko Ishihara | Q114409712 | ||
| Mutsumi Kanamori-Katayama | Q114432020 | ||
| Atsutaka Kubosaki | Q114432024 | ||
| Noriko Ninomiya | Q114432030 | ||
| Michihira Tagami | Q114432044 | ||
| Atanas Kamburov | Q114432061 | ||
| Cameron Ross MacPherson | Q114432062 | ||
| Kayoko Murakami | Q114432063 | ||
| Kengo Imamura | Q114432064 | ||
| Chikatoshi Kai | Q114432065 | ||
| Rohan D. Teasdale | Q37377139 | ||
| Oliver Hofmann | Q37383942 | ||
| Winston Hide | Q37383962 | ||
| Sean Grimmond | Q38802553 | ||
| Hideya Kawaji | Q39066522 | ||
| Timothy Ravasi | Q39663160 | ||
| Boris Lenhard | Q40078857 | ||
| Nicolas Bertin | Q40584212 | ||
| Sebastian Schmeier | Q41052223 | ||
| Shintaro Katayama | Q41627191 | ||
| Takahiro Arakawa | Q42930609 | ||
| P2093 | author name string | Jun Kawai | |
| Mandeep Kaur | |||
| Kai Tan | |||
| Chihiro Ogawa | |||
| Takehiro Hashimoto | |||
| Yayoi Kitazume | |||
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| P577 | publication date | 2010-03-05 | |
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| Q37061160 | NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors |
| Q48171311 | Network analysis of SRC-1 reveals a novel transcription factor hub which regulates endocrine resistant breast cancer |
| Q35932190 | Network-Based Association Study of Obesity and Type 2 Diabetes with Gene Expression Profiles |
| Q41821042 | Networks of bZIP protein-protein interactions diversified over a billion years of evolution |
| Q26991938 | Non-transcriptional interactions of Hox proteins: inventory, facts, and future directions |
| Q34110439 | Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes |
| Q34401467 | Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences |
| Q31060298 | PIAS1 is a GATA4 SUMO ligase that regulates GATA4-dependent intestinal promoters independent of SUMO ligase activity and GATA4 sumoylation |
| Q33917834 | Pathways on demand: automated reconstruction of human signaling networks |
| Q36375690 | Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data |
| Q34587218 | Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies |
| Q36188892 | Plenary perspective: the complexity of constitutive and inducible gene expression in mononuclear phagocytes |
| Q30842375 | Point mutations in murine Nkx2-5 phenocopy human congenital heart disease and induce pathogenic Wnt signaling. |
| Q31104325 | Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome. |
| Q35044479 | Predicting tissue specific transcription factor binding sites |
| Q33740989 | Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data |
| Q33632045 | PriorsEditor: a tool for the creation and use of positional priors in motif discovery. |
| Q47224226 | Probing instructions for expression regulation in gene nucleotide compositions. |
| Q34489707 | Profiling the transcription factor regulatory networks of human cell types |
| Q38658633 | Progress and challenges in bioinformatics approaches for enhancer identification |
| Q34042616 | Protein networks as logic functions in development and cancer |
| Q26851340 | Proteomics: from single molecules to biological pathways |
| Q36876232 | Quantification of Cooperativity in Heterodimer-DNA Binding Improves the Accuracy of Binding Specificity Models. |
| Q37714280 | Quantitative proteomics by SWATH-MS reveals altered expression of nucleic acid binding and regulatory proteins in HIV-1-infected macrophages |
| Q37368517 | RMaNI: Regulatory Module Network Inference framework |
| Q92669062 | Rapamycin-upregulated miR-29b promotes mTORC1-hyperactive cell growth in TSC2-deficient cells by downregulating tumor suppressor retinoic acid receptor β (RARβ) |
| Q38180770 | Recent advances in the structural molecular biology of Ets transcription factors: interactions, interfaces and inhibition. |
| Q90064984 | Reconstructing signaling pathways using regular language constrained paths |
| Q34200997 | Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts |
| Q36109607 | RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse |
| Q30956005 | Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer |
| Q34107760 | Relating gene expression evolution with CpG content changes |
| Q33664296 | Relationship between regulatory pattern of gene expression level and gene function. |
| Q26822957 | Repair of oxidative DNA damage and cancer: recent progress in DNA base excision repair |
| Q28393663 | Reprogramming of lysosomal gene expression by interleukin-4 and Stat6 |
| Q34540460 | Reptile Pregnancy Is Underpinned by Complex Changes in Uterine Gene Expression: A Comparative Analysis of the Uterine Transcriptome in Viviparous and Oviparous Lizards |
| Q35102096 | Role of helix-loop-helix proteins during differentiation of erythroid cells |
| Q48349026 | SMiLE-seq identifies binding motifs of single and dimeric transcription factors |
| Q52608499 | STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers. |
| Q38180808 | Schwannomas and their pathogenesis |
| Q34051071 | Selection signatures in worldwide sheep populations |
| Q37069461 | Separated at birth? The functional and molecular divergence of OLIG1 and OLIG2. |
| Q39283917 | Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors |
| Q34728356 | Sexually-dimorphic targeting of functionally-related genes in COPD |
| Q33909150 | Short DNA sequence patterns accurately identify broadly active human enhancers |
| Q59339812 | Signatures of selection and environmental adaptation across the goat genome post-domestication |
| Q34851461 | Simplified method for predicting a functional class of proteins in transcription factor complexes |
| Q33959387 | Simplified method to predict mutual interactions of human transcription factors based on their primary structure |
| Q35570028 | Simultaneous generation of many RNA-seq libraries in a single reaction |
| Q89945306 | Single-cell transcriptome analysis reveals TOX as a promoting factor for T cell exhaustion and a predictor for anti-PD-1 responses in human cancer |
| Q50100493 | SoxC transcription factors: multifunctional regulators of neurodevelopment. |
| Q38115966 | Specificity through cooperation: BATF-IRF interactions control immune-regulatory networks |
| Q36499925 | Squalene epoxidase is a bona fide oncogene by amplification with clinical relevance in breast cancer |
| Q33963413 | Stage prediction of embryonic stem cell differentiation from genome-wide expression data |
| Q37088590 | Statistical significance of combinatorial regulations |
| Q47314543 | StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data |
| Q37304886 | Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements. |
| Q38358141 | Structure-function based molecular relationships in Ewing's sarcoma. |
| Q28710194 | SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates |
| Q21560932 | Systematic clustering of transcription start site landscapes |
| Q34873625 | Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection |
| Q49186985 | Systematic target function annotation of human transcription factors. |
| Q34064732 | Systems analysis of ATF3 in stress response and cancer reveals opposing effects on pro-apoptotic genes in p53 pathway. |
| Q37870004 | Systems biology approaches to heart development and congenital heart disease |
| Q38264816 | T follicular helper cell differentiation, function, and roles in disease |
| Q36563290 | T-cell-intrinsic Tif1α/Trim24 regulates IL-1R expression on TH2 cells and TH2 cell-mediated airway allergy. |
| Q38057999 | TCF4 (e2-2; ITF2): a schizophrenia-associated gene with pleiotropic effects on human disease |
| Q90715081 | TICA: Transcriptional Interaction and Coregulation Analyzer |
| Q47098875 | TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions |
| Q35728153 | TRRUST: a reference database of human transcriptional regulatory interactions |
| Q37711706 | Targeted CNS Delivery Using Human MiniPromoters and Demonstrated Compatibility with Adeno-Associated Viral Vectors. |
| Q34954162 | Targeting RNA binding proteins involved in neurodegeneration |
| Q89157968 | Targeting Transcription Factors for Cancer Treatment |
| Q38441104 | TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions |
| Q24607892 | TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins |
| Q38002489 | The 1-1-1 fallacy |
| Q37123897 | The Cellular and Molecular Landscapes of the Developing Human Central Nervous System |
| Q36109366 | The DEK Oncoprotein Is a Critical Component of the EKLF/KLF1 Enhancer in Erythroid Cells |
| Q38604037 | The FANTOM5 collection, a data series underpinning mammalian transcriptome atlases in diverse cell types |
| Q28818455 | The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression |
| Q24614215 | The RIKEN integrated database of mammals |
| Q47377289 | The Transcriptional Network Structure of a Myeloid Cell: A Computational Approach. |
| Q33815387 | The architecture of gene regulatory variation across multiple human tissues: the MuTHER study |
| Q36305662 | The co-regulation mechanism of transcription factors in the human gene regulatory network |
| Q89625555 | The differences in brain stem transcriptional profiling in hypertensive ISIAH and normotensive WAG rats |
| Q24629522 | The distinct and overlapping phenotypic spectra of FOXP1 and FOXP2 in cognitive disorders |
| Q52560248 | The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. |
| Q36254999 | The gene-expression profile of renal medulla in ISIAH rats with inherited stress-induced arterial hypertension |
| Q37829811 | The genomic landscapes of inflammation. |
| Q38175839 | The grammar of transcriptional regulation |
| Q39061962 | The homeodomain transcription factor Hoxa2 interacts with and promotes the proteasomal degradation of the E3 ubiquitin protein ligase RCHY1. |
| Q21203074 | The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity |
| Q28542039 | The molecular phenotype of endocapillary proliferation: novel therapeutic targets for IgA nephropathy |
| Q91807286 | The orphan nuclear receptor SHP regulates ER stress response by inhibiting XBP1s degradation |
| Q34635618 | The patterns of histone modifications in the vicinity of transcription factor binding sites in human lymphoblastoid cell lines |
| Q47212616 | The phosphatidylinositide 3-kinase (PI3K) signaling pathway is a determinant of zileuton response in adults with asthma |
| Q35453891 | The polycomb group protein L3MBTL1 represses a SMAD5-mediated hematopoietic transcriptional program in human pluripotent stem cells |
| Q39039006 | The recurrent architecture of tumour initiation, progression and drug sensitivity |
| Q37649097 | The transcription-splicing protein NonO/p54nrb and three NonO-interacting proteins bind to distal enhancer region and augment rhodopsin expression |
| Q30410818 | The transcriptome of utricle hair cell regeneration in the avian inner ear. |
| Q30431285 | Time-dependent gene expression analysis of the developing superior olivary complex |
| Q26863527 | Tracking context-specific transcription factors regulating hox activity |
| Q27317702 | Transcription Factors Expressed in Mouse Cochlear Inner and Outer Hair Cells |
| Q90723195 | Transcription Factors That Govern Development and Disease: An Achilles Heel in Cancer |
| Q84153088 | Transcription fact or interact ion maps |
| Q34312883 | Transcription factor co-localization patterns affect human cell type-specific gene expression |
| Q37962587 | Transcription factor interactions in genomic nuclear receptor function. |
| Q35267846 | Transcription factor networks in Drosophila melanogaster |
| Q27023005 | Transcription factor-mediated reprogramming toward hematopoietic stem cells |
| Q35020492 | Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines |
| Q38855841 | Transcriptional gene network inference from a massive dataset elucidates transcriptome organization and gene function. |
| Q34043126 | Transcriptional networks in epithelial-mesenchymal transition |
| Q55331821 | Transcriptional regulation of brain gene expression in response to a territorial intrusion. |
| Q33799561 | Transcriptome analysis reveals similarities between human blood CD3- CD56bright cells and mouse CD127+ innate lymphoid cells. |
| Q46976745 | Transcriptome profiling of the developing postnatal mouse testis using next-generation sequencing |
| Q42772867 | Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals. |
| Q48060652 | Trends in computational biology—2010. |
| Q30432441 | Trinucleotide repeats: a structural perspective |
| Q33884045 | Unexpected complexity of the reef-building coral Acropora millepora transcription factor network |
| Q41958694 | Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection. |
| Q39632067 | Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation |
| Q35589296 | VISIONET: intuitive visualisation of overlapping transcription factor networks, with applications in cardiogenic gene discovery. |
| Q26799185 | VKORC1 and VKORC1L1: Why do Vertebrates Have Two Vitamin K 2,3-Epoxide Reductases? |
| Q34364719 | Variation and genetic control of gene expression in primary immunocytes across inbred mouse strains |
| Q35557735 | What does biologically meaningful mean? A perspective on gene regulatory network validation |
| Q34426308 | What evidence is there for the homology of protein-protein interactions? |
| Q38012356 | What model organisms and interactomics can reveal about the genetics of human obesity |
| Q37197823 | Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development |
| Q58704968 | coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers |
| Q34502379 | mCOPA: analysis of heterogeneous features in cancer expression data |
| Q57790155 | wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool |
| Q24299363 | Role of activating transcription factor 3 (ATF3) in endoplasmic reticulum (ER) stress-induced sensitization of p53-deficient human colon cancer cells to tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL)-mediated apoptosis through |
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