Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

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Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA is …
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scholarly articleQ13442814

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P356DOI10.1016/J.MOLCEL.2009.06.027
P3181OpenCitations bibliographic resource ID2954420
P932PMC publication ID2749223
P698PubMed publication ID19716791
P5875ResearchGate publication ID26776606

P2093author name stringLing-Ling Chen
Gordon G Carmichael
P2860cites workA screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domainsQ21266548
P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent mannerQ22066089
PSF is a novel corepressor that mediates its effect through Sin3A and the DNA binding domain of nuclear hormone receptorsQ24290950
The transcriptome profile of human embryonic stem cells as defined by SAGEQ24302502
A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitmentQ24310207
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspecklesQ24310786
Localization of the developmental timing regulator Lin28 to mRNP complexes, P-bodies and stress granulesQ24317757
Cloning and characterization of PSF, a novel pre-mRNA splicing factorQ24322621
Human 100-kDa homologous DNA-pairing protein is the splicing factor PSF and promotes DNA strand invasionQ24522742
Purification and characterization of a DNA-binding heterodimer of 52 and 100 kDa from HeLa cellsQ24527699
Splicing and transcription-associated proteins PSF and p54nrb/nonO bind to the RNA polymerase II CTDQ24540125
A novel set of spliceosome-associated proteins and the essential splicing factor PSF bind stably to pre-mRNA prior to catalytic step II of the splicing reactionQ24594778
Selective blockade of microRNA processing by Lin28Q24609864
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspecklesQ24646100
MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspecklesQ24651886
Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processingQ24652787
The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription terminationQ24671920
RNA editing by adenosine deaminases that act on RNAQ24679593
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptomeQ24806860
Octameric structure of the human bifunctional enzyme PAICS in purine biosynthesisQ27643550
Induced pluripotent stem cell lines derived from human somatic cellsQ27860597
Induction of pluripotent stem cells from adult human fibroblasts by defined factorsQ27860967
A bivalent chromatin structure marks key developmental genes in embryonic stem cellsQ27860977
Polypyrimidine tract-binding protein-associated splicing factor is a negative regulator of transcriptional activity of the porcine p450scc insulin-like growth factor response elementQ28137944
p54nrb acts as a transcriptional coactivator for activation function 1 of the human androgen receptorQ28179614
The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAsQ28214585
Paraspeckles: a novel nuclear domainQ28215450
Expression and functional significance of mouse paraspeckle protein 1 on spermatogenesisQ28261500
Regulating gene expression through RNA nuclear retentionQ28278213
The RNA-splicing factor PSF/p54 controls DNA-topoisomerase I activity by a direct interactionQ28284025
Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesisQ28510594
Stress-induced Apoptosis Associated with Null Mutation of ADAR1 RNA Editing Deaminase GeneQ28586807
ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signalingQ28591461
NonO, a non-POU-domain-containing, octamer-binding protein, is the mammalian homolog of Drosophila nonAdissQ28776202
ParaspecklesQ29397010
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells.Q29614677
Systematic identification of abundant A-to-I editing sites in the human transcriptomeQ29619584
Widespread RNA editing of embedded alu elements in the human transcriptomeQ31108738
A survey of RNA editing in human brainQ31127917
Antisense RNA: function and fate of duplex RNA in cells of higher eukaryotes.Q34010093
Feeder-free growth of undifferentiated human embryonic stem cellsQ34093315
p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.Q34310192
Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cellsQ34405302
The intracisternal A-particle proximal enhancer-binding protein activates transcription and is identical to the RNA- and DNA-binding protein p54nrb/NonO.Q34413812
Identification and characterization of a virus-inducible non-coding RNA in mouse brainQ34535830
Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28.Q34786272
Effects of length and location on the cellular response to double-stranded RNA.Q35880915
Chromatin in pluripotent embryonic stem cells and differentiationQ36488700
Global transcription in pluripotent embryonic stem cells.Q36731567
C. elegans and H. sapiens mRNAs with edited 3' UTRs are present on polysomesQ36909674
Gene regulation by SINES and inosines: biological consequences of A-to-I editing of Alu element inverted repeatsQ37307405
NonO enhances the association of many DNA-binding proteins to their targetsQ38345001
Alu element-mediated gene silencingQ39408863
Lin28 modulates cell growth and associates with a subset of cell cycle regulator mRNAs in mouse embryonic stem cellsQ39894681
Determination of preferential binding sites for anti-dsRNA antibodies on double-stranded RNA by scanning force microscopyQ42053304
Modulation of double-stranded RNAs in vivo by RNA duplex unwindaseQ44158950
Mutations that affect neural cell lineages and cell fates during the development of the nematode Caenorhabditis elegansQ44883331
The mechanism of adenosine to inosine conversion by the double-stranded RNA unwinding/modifying activity: a high-performance liquid chromatography-mass spectrometry analysisQ45160107
Heterochronic mutants of the nematode Caenorhabditis elegans.Q52272168
A Mammalian Activity Required for the Second Step of Pre-messenger RNA SplicingQ58673175
An unwinding activity that covalently modifies its double-stranded RNA substrateQ67989221
BMP4 initiates human embryonic stem cell differentiation to trophoblastQ78501115
P4510describes a project that usesImageJQ1659584
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectcell biologyQ7141
human embryonic stem cellQ59626782
P304page(s)467-78
P577publication date2009-08-28
P1433published inMolecular CellQ3319468
P1476titleAltered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA
P478volume35