Novel bioinformatic developments for exome sequencing

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Novel bioinformatic developments for exome sequencing is …
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review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1043091107
P356DOI10.1007/S00439-016-1658-6
P3181OpenCitations bibliographic resource ID2334933
P932PMC publication ID4883269
P698PubMed publication ID27075447

P50authorJoris A VeltmanQ57687954
Christian GilissenQ39793064
P2093author name stringStefan H Lelieveld
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
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Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disordersQ28279421
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Somatic mutation, genomic variation, and neurological diseaseQ28395313
GenomeConnect: matchmaking between patients, clinical laboratories, and researchers to improve genomic knowledgeQ28607476
The Matchmaker Exchange: a platform for rare disease gene discoveryQ28610742
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The 1000 Genomes Project: data management and community accessQ28730196
Compressing genomic sequence fragments using SlimGeneQ28743236
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Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomaliesQ28752220
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The variant call format and VCFtoolsQ29614172
Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutationsQ29614573
Exome sequencing as a tool for Mendelian disease gene discoveryQ29615382
A general framework for estimating the relative pathogenicity of human genetic variantsQ29615730
A systematic survey of loss-of-function variants in human protein-coding genesQ29615756
Evolution and functional impact of rare coding variation from deep sequencing of human exomesQ29617587
Detection of nonneutral substitution rates on mammalian phylogeniesQ30080028
Copy number variation detection and genotyping from exome sequence dataQ30422583
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Finding the lost treasures in exome sequencing dataQ30663128
Identification of small exonic CNV from whole-exome sequence data and application to autism spectrum disorderQ30671413
Compression of structured high-throughput sequencing dataQ30698740
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype callsQ30758000
Data analysis: Create a cloud commonsQ30979327
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Efficient genotype compression and analysis of large genetic-variation data sets.Q31019979
Genic intolerance to functional variation and the interpretation of personal genomesQ31129974
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dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotationsQ33945578
RD-Connect: an integrated platform connecting databases, registries, biobanks and clinical bioinformatics for rare disease researchQ34011881
Biomedical cloud computing with Amazon Web ServicesQ34013580
Copy number variation in human health, disease, and evolutionQ34019142
Saturation editing of genomic regions by multiplex homology-directed repairQ34143368
Loss-of-function variants in the genomes of healthy humansQ34192902
The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotypingQ34297070
Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analysesQ34372209
A founder mutation as a cause of cerebral cavernous malformation in Hispanic AmericansQ34374659
Jannovar: a java library for exome annotationQ34412573
Clinical whole-exome sequencing for the diagnosis of mendelian disordersQ34413680
Genome sequencing identifies major causes of severe intellectual disabilityQ34422838
A method for calculating probabilities of fitness consequences for point mutations across the human genomeQ34458674
Reference-based compression of short-read sequences using path encodingQ34461173
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The UK10K project identifies rare variants in health and diseaseQ34494047
A survey of tools for variant analysis of next-generation genome sequencing dataQ34557864
CoNVEX: copy number variation estimation in exome sequencing data using HMMQ34569598
Interpretation of genomic variants using a unified biological network approachQ34625256
In silico prediction of splice-altering single nucleotide variants in the human genomeQ34711972
NCBI's Database of Genotypes and Phenotypes: dbGaP.Q35057773
DANN: a deep learning approach for annotating the pathogenicity of genetic variantsQ35123300
The Scramble conversion toolQ35188396
Bioinformatics on the cloud computing platform Azure.Q35210958
CODEX: a normalization and copy number variation detection method for whole exome sequencingQ35237008
Big Data: Astronomical or Genomical?Q35685054
New insights into the performance of human whole-exome capture platforms.Q35770586
A method to predict the impact of regulatory variants from DNA sequenceQ35904489
The missing indels: an estimate of indel variation in a human genome and analysis of factors that impede detectionQ36002435
Comparison of predicted and actual consequences of missense mutationsQ36079003
Genomic cloud computing: legal and ethical points to considerQ36116641
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectbioinformaticsQ128570
computational biologyQ177005
human genomeQ720988
biomedical investigative techniqueQ66648976
P304page(s)603-14
P577publication date2016-06-01
P1433published inHuman GeneticsQ5937167
P1476titleNovel bioinformatic developments for exome sequencing
P478volume135

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cites work (P2860)
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Q40638979OpEx - a validated, automated pipeline optimised for clinical exome sequence analysis.
Q64913621Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data.
Q53688374Whole-Exome Sequencing Reveals Uncaptured Variation and Distinct Ancestry in the Southern African Population of Botswana.

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