Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse

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Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse is …
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scholarly articleQ13442814

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P356DOI10.1371/JOURNAL.PBIO.0020393
P3181OpenCitations bibliographic resource ID499294
P932PMC publication ID526179
P698PubMed publication ID15534693
P5875ResearchGate publication ID8185648

P50authorAndrew I. SuQ19857262
Serge BatalovQ30112557
P2093author name stringTim Wiltshire
Philip McClurg
Beverly Paigen
Deborah Nusskern
Erica Lagler
Mathew T Pletcher
Molly A Bogue
Richard J Mural
Ron Korstanje
S Whitney Barnes
Xiaosong Wang
P2860cites workPhenotypic characterization of Lith genes that determine susceptibility to cholesterol cholelithiasis in inbred mice: physical-chemistry of gallbladder bile.Q50941773
In silico mapping of mouse quantitative trait loci.Q52045657
In silico mapping of complex disease-related traits in mice.Q52061184
Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouseQ57634922
The mosaic structure of variation in the laboratory mouse genomeQ59088082
Single-Locus Control of Saccharin Preference in MiceQ69805303
Genomic analysis of the C57BL/Ks mouse strainQ72278542
Mouse Phenome Project: understanding human biology through mouse genetics and genomicsQ73933669
In silico quantitative trait locus map for atherosclerosis susceptibility in apolipoprotein E-deficient miceQ78780706
Initial sequencing and comparative analysis of the mouse genomeQ22122521
Isolation and sequence of a cDNA clone for human tyrosinase that maps at the mouse c-albino locusQ24633925
Positional cloning of the mouse saccharin preference (Sac) locusQ28352042
Molecular cloning and characterization of the type VII isoform of mammalian adenylyl cyclase expressed widely in mouse tissues and in S49 mouse lymphoma cellsQ28588592
Genetic dissection of complex traits: guidelines for interpreting and reporting linkage resultsQ29547377
Empirical threshold values for quantitative trait mappingQ29615044
Retinal degeneration in the rd mouse is caused by a defect in the beta subunit of rod cGMP-phosphodiesteraseQ33505505
Genealogies of mouse inbred strainsQ33806120
Combined analysis of genome scans of dutch and finnish families reveals a susceptibility locus for high-density lipoprotein cholesterol on chromosome 16qQ33905086
Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac.Q33944523
Quantitative trait loci and candidate genes regulating HDL cholesterol: a murine chromosome map.Q34858568
Genome-wide single-nucleotide polymorphism analysis defines haplotype patterns in mouseQ34869723
The nature and identification of quantitative trait loci: a community's viewQ35591720
Unexpected complexity in the haplotypes of commonly used inbred strains of laboratory miceQ36449596
Quantitative trait loci influencing cholesterol and phospholipid phenotypes map to chromosomes that contain genes regulating blood pressure in the spontaneously hypertensive ratQ37358504
Complex genetic control of HDL levels in mice in response to an atherogenic diet. Coordinate regulation of HDL levels and bile acid metabolismQ37365330
Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6 mb of mouse genomeQ39816862
Interacting QTLs for cholesterol gallstones and gallbladder mucin in AKR and SWR strains of miceQ43884375
Mechanisms of leptin secretion from white adipocytesQ44021424
Lith genes control mucin accumulation, cholesterol crystallization, and gallstone formation in A/J and AKR/J inbred miceQ44190753
Multiple testing. Part I. Single-step procedures for control of general type I error ratesQ44314384
A quantitative trait locus on chromosome 16q influences variation in plasma HDL-C levels in Mexican AmericansQ44316944
Quantitative trait locus analysis of serum insulin, triglyceride, total cholesterol and phospholipid levels in the (SM/J x A/J)F2 miceQ44362757
Lith6: a new QTL for cholesterol gallstones from an intercross of CAST/Ei and DBA/2J inbred mouse strainsQ44480876
New quantitative trait loci that contribute to cholesterol gallstone formation detected in an intercross of CAST/Ei and 129S1/SvImJ inbred miceQ44499544
Novel QTLs for HDL levels identified in mice by controlling for Apoa2 allelic effects: confirmation of a chromosome 6 locus in a congenic strainQ44727337
Quantitative trait locus analysis of plasma lipoprotein levels in an autoimmune mouse model : interactions between lipoprotein metabolism, autoimmune disease, and atherogenesisQ46588049
Molecular characterization of the mouse agouti locus.Q48143334
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genomeQ48300754
Ethanol-induced conditioned taste aversion in BXD recombinant inbred miceQ48713356
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectin silicoQ192572
single-nucleotide polymorphismQ501128
P304page(s)e393
P577publication date2004-12-01
P1433published inPLOS BiologyQ1771695
P1476titleUse of a dense single nucleotide polymorphism map for in silico mapping in the mouse
P478volume2

Reverse relations

cites work (P2860)
Q38483636A comprehensive mouse IBD database for the efficient localization of quantitative trait loci.
Q30435297A high-resolution association mapping panel for the dissection of complex traits in mice
Q27315085A high-resolution map of segmental DNA copy number variation in the mouse genome
Q33263584A high-resolution single nucleotide polymorphism genetic map of the mouse genome
Q37625601A large QTL for fear and anxiety mapped using an F2 cross can be dissected into multiple smaller QTLs.
Q35222170A locus on mouse Chromosome 9 (Adip5) affects the relative weight of the gonadal but not retroperitoneal adipose depot
Q30541064A major QTL on chromosome 11 influences psychostimulant and opioid sensitivity in mice
Q36633052A meta-analysis of quantitative trait loci associated with body weight and adiposity in mice
Q33914072A survey of airway responsiveness in 36 inbred mouse strains facilitates gene mapping studies and identification of quantitative trait loci
Q28768377An XML-based system for synthesis of data from disparate databases
Q33517864An experimental assessment of in silico haplotype association mapping in laboratory mice
Q34448414An imprinted locus epistatically influences Nstr1 and Nstr2 to control resistance to nerve sheath tumors in a neurofibromatosis type 1 mouse model
Q37301828An imputed genotype resource for the laboratory mouse
Q38482617An integrated in silico gene mapping strategy in inbred mice
Q47983744An integrative genomic analysis of the superior fecundity phenotype in QSi5 mice.
Q80081415Analysis of expansion of myeloid progenitors in mice to identify leukemic susceptibility genes
Q48446986Analysis of the QTL for sleep homeostasis in mice: Homer1a is a likely candidate
Q36092267Ancestral bias in the Hras1 gene and distal Chromosome 7 among inbred mice
Q51175377Assessing multilocus introgression patterns: a case study on the mouse X chromosome in central Europe.
Q45228878Assessing the prospects of genome-wide association studies performed in inbred mice
Q34027385CGDSNPdb: a database resource for error-checked and imputed mouse SNPs
Q33257734Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations
Q25257153Comparative analysis of haplotype association mapping algorithms
Q37115953Comparative genomics for detecting human disease genes
Q44042948Complement factor 5 is a quantitative trait gene that modifies liver fibrogenesis in mice and humans
Q35809331Computational tools for discovery and interpretation of expression quantitative trait loci
Q30497304Comt1 genotype and expression predicts anxiety and nociceptive sensitivity in inbred strains of mice
Q24814857Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain).
Q42539452Copy number variation in the mouse genome: implications for the mouse as a model organism for human disease
Q33321716Cranial bone morphometric study among mouse strains
Q35751646DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies.
Q31036127Data and animal management software for large-scale phenotype screening
Q34966541Detection and interpretation of expression quantitative trait loci (eQTL).
Q34678450Determinants of host susceptibility to murine respiratory syncytial virus (RSV) disease identify a role for the innate immunity scavenger receptor MARCO gene in human infants
Q34147751Differential gene expression in primary breast tumors associated with lymph node metastasis
Q36515832Efficient control of population structure in model organism association mapping
Q24814007Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates
Q24812829Evidence of a large-scale functional organization of mammalian chromosomes
Q36061245Exploiting expression patterns across multiple tissues to map expression quantitative trait loci
Q30421581FVB/NJ mice demonstrate a youthful sensitivity to noise-induced hearing loss and provide a useful genetic model for the study of neural hearing loss
Q37097098FastMap: fast eQTL mapping in homozygous populations.
Q35090881Finding the molecular basis of complex genetic variation in humans and mice
Q41871663Fine haplotype structure of a chromosome 17 region in the laboratory and wild mouse
Q34007867Fine mapping in 94 inbred mouse strains using a high-density haplotype resource
Q33583837Fine mapping of an epilepsy modifier gene on mouse Chromosome 19.
Q36158114Forty mouse strain survey of body composition
Q30493706Forty mouse strain survey of water and sodium intake.
Q37980649Forward genetic approaches to understanding complex behaviors.
Q38024841From mouse to humans: discovery of the CACNG2 pain susceptibility gene
Q37297966Functional genomic assessment of phosgene-induced acute lung injury in mice
Q58376767GENETIC ANALYSIS OF AUTOSOMAL AND X-LINKED MARKERS ACROSS A MOUSE HYBRID ZONE
Q31154756Gene set enrichment in eQTL data identifies novel annotations and pathway regulators
Q33594632Genetic analysis of albuminuria in aging mice and concordance with loci for human diabetic nephropathy found in a genome-wide association scan
Q34746058Genetic analysis of mouse strains with variable serum sodium concentrations identifies the Nalcn sodium channel as a novel player in osmoregulation
Q36155114Genetic and genomic insights into the molecular basis of atherosclerosis
Q36846830Genetic influence on immune phenotype revealed strain-specific variations in peripheral blood lineages
Q33569219Genetic polymorphisms associated with acute lung injury
Q38480101Genetic regulation of behavioral and neuronal responses to fluoxetine
Q36299344Genetic variation in laboratory mice
Q37681343Genetics of osteoporosis: accelerating pace in gene identification and validation
Q34657673Genome and proteome annotation: organization, interpretation and integration
Q27325633Genome wide analysis of inbred mouse lines identifies a locus containing Ppar-gamma as contributing to enhanced malaria survival
Q30008886Genome-Wide Association Mapping for Female Infertility in Inbred Mice
Q27321031Genome-wide association mapping in dogs enables identification of the homeobox gene, NKX2-8, as a genetic component of neural tube defects in humans
Q33613229Genome-wide association mapping of acute lung injury in neonatal inbred mice
Q36763587Genome-wide association studies in mice
Q28589643Genome-wide linkage identifies novel modifier loci of aganglionosis in the Sox10Dom model of Hirschsprung disease
Q81579227Genomewide analysis of secretory activation in mouse models
Q35844809Genomewide association analysis in diverse inbred mice: power and population structure
Q35994981Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus
Q35107680Haplotype association mapping of acute lung injury in mice implicates activin a receptor, type 1
Q33752000Haplotypes on pig chromosome 3 distinguish metabolically healthy from unhealthy obese individuals
Q37007504High-precision genetic mapping of behavioral traits in the diversity outbred mouse population.
Q34578716Hybrid C57BL/6J x FVB/NJ mice drink more alcohol than do C57BL/6J mice
Q30422039Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits
Q35846272Identification of Mom7, a novel modifier of Apc(Min/+) on mouse chromosome 18.
Q51143319Identification of diabetes susceptibility loci in db mice by combined quantitative trait loci analysis and haplotype mapping.
Q36320719Identification of exercise capacity QTL using association mapping in inbred mice
Q28507726Identification of novel genes that mediate innate immunity using inbred mice
Q33926529Identification of quantitative trait loci for locomotor activation and anxiety using closely related inbred strains
Q35425222Immune cell-based screening assay for response to anticancer agents: applications in pharmacogenomics
Q34661915In silico QTL mapping of basal liver iron levels in inbred mouse strains
Q37175776In silico QTL mapping of maternal nurturing ability with the mouse diversity panel.
Q90730373In silico mapping of quantitative trait loci (QTL) regulating the milk ionome in mice identifies a milk iron locus on chromosome 1
Q30490152In silico whole genome association scan for murine prepulse inhibition
Q35994508In-silico QTL mapping of postpubertal mammary ductal development in the mouse uncovers potential human breast cancer risk loci
Q30418487Increasing association mapping power and resolution in mouse genetic studies through the use of meta-analysis for structured populations
Q33748270Integrated genomics of susceptibility to alkylator-induced leukemia in mice
Q46673326Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels
Q30000813Integration of mouse and human genome-wide association data identifies KCNIP4 as an asthma gene
Q28387715Integrative assessment of chlorine-induced acute lung injury in mice
Q41833858Interpretation of the mouse electroretinogram.
Q37213346Intra- and inter-individual genetic differences in gene expression
Q30502442Large-scale in silico mapping of complex quantitative traits in inbred mice
Q36414964Large-scale mutagenesis and phenotypic screens for the nervous system and behavior in mice.
Q33295226Linkage disequilibrium in wild mice
Q34565089Mapping quantitative traits and strategies to find quantitative trait genes
Q36304268Mechanisms of disease: the genetic epidemiology of gallbladder stones
Q35195159MicroRNA expression in the livers of inbred mice
Q36969697Mixed effects models for quantitative trait loci mapping with inbred strains
Q34760506Modifier genes for mouse phosphatidylinositol transfer protein α (vibrator) that bypass juvenile lethality
Q28763780Mouse Phenome Database (MPD)
Q33269877Mouse SNP Miner: an annotated database of mouse functional single nucleotide polymorphisms
Q37164126Mouse forward genetics in the study of the peripheral nervous system and human peripheral neuropathy
Q63951604Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.
Q64983805Mouse models of cancer: does the strain matter?
Q27313904Mst1 directs Myosin IIa partitioning of low and higher affinity integrins during T cell migration
Q27320176Natural genetic variation of integrin alpha L (Itgal) modulates ischemic brain injury in stroke
Q36416208Nucleotide variation in wild and inbred mice
Q80694646On the subspecific origin of the laboratory mouse
Q33785836Phenotypic characterization of a genetically diverse panel of mice for behavioral despair and anxiety
Q37011444Practical applications of the bioinformatics toolbox for narrowing quantitative trait loci
Q42708956Prospects for association mapping in classical inbred mouse strains
Q34901756QTL analysis of dietary obesity in C57BL/6byj X 129P3/J F2 mice: diet- and sex-dependent effects
Q80988562QTL mapping in a mouse model of cardiomyopathy reveals an ancestral modifier allele affecting heart function and survival
Q50716558Quantitative trait loci analysis of mice administered the methionine-choline deficient dietary model of experimental steatohepatitis.
Q33529565Screening the mammalian extracellular proteome for regulators of embryonic human stem cell pluripotency
Q57943888Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes
Q34587007Signatures of reproductive isolation in patterns of single nucleotide diversity across inbred strains of mice
Q34588197Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice
Q36724260Single-nucleotide-polymorphism-based association mapping of dog stereotypes
Q33222808Sipa1 is a candidate for underlying the metastasis efficiency modifier locus Mtes1.
Q37257640Strain-dependent differences in susceptibility to lung cancer in inbred mice exposed to mainstream cigarette smoke
Q36403393Strain-specific susceptibility for pulmonary metastasis of sarcoma 180 cells in inbred mice
Q36085684Strategies for mapping and cloning quantitative trait genes in rodents
Q79701040Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity
Q36654652Systems biology of circadian rhythms: an outlook
Q27491019The Major Locus for Mouse Adenovirus Susceptibility Maps to Genes of the Hematopoietic Cell Surface-Expressed LY6 Family
Q53180587The genetics of albuminuria: from haplotype association mapping in mice to genetic causation in humans.
Q37309209The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells
Q36685876The mouse as a model for human biology: a resource guide for complex trait analysis
Q51661893The network as the target
Q31120643The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics
Q30498614Two quantitative trait loci for prepulse inhibition of startle identified on mouse chromosome 16 using chromosome substitution strains
Q46471417Type 2 diabetes mouse model TallyHo carries an obesity gene on chromosome 6 that exaggerates dietary obesity
Q30444388Untapped resources for pharmacogenomic discovery in psychiatry
Q37371867Using hippocampal microRNA expression differences between mouse inbred strains to characterise miRNA function
Q36698831Using mouse genomics to understand idiopathic interstitial fibrosis
Q34483116Utilization of a whole genome SNP panel for efficient genetic mapping in the mouse