Comparative analysis of protein coding sequences from human, mouse and the domesticated pig

scientific article

Comparative analysis of protein coding sequences from human, mouse and the domesticated pig is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1023352199
P356DOI10.1186/1741-7007-3-2
P932PMC publication ID549206
P698PubMed publication ID15679890
P5875ResearchGate publication ID8051993

P50authorMerete FredholmQ28778502
Christian BendixenQ47007066
Mikkel Heide SchierupQ30503071
P2093author name stringHenrik Hornshøj
Asger Hobolth
Frank Grønlund Jørgensen
P2860cites workSlightly Deleterious Mutant Substitutions in EvolutionQ22122425
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionQ22122484
Genome sequence of the Brown Norway rat yields insights into mammalian evolutionQ22122498
Initial sequencing and comparative analysis of the mouse genomeQ22122521
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classificationQ24681693
Genealogical evidence for positive selection in the nef gene of HIV-1Q27473192
Codon-substitution models for heterogeneous selection pressure at amino acid sitesQ27473194
Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolatesQ27473197
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approachQ27860716
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAQ27860908
PAML: a program package for phylogenetic analysis by maximum likelihoodQ27861096
Molecular phylogenetics and the origins of placental mammalsQ28201892
Resolution of the early placental mammal radiation using Bayesian phylogeneticsQ28211064
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genomeQ28241386
A codon-based model of nucleotide substitution for protein-coding DNA sequencesQ28241397
Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesisQ28282820
The marsupial mitochondrial genome and the evolution of placental mammalsQ28769461
The pattern of mammalian evolution and the relative rate of molecular evolutionQ28769474
Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocksQ28775750
Rate constancy of globin gene evolution in placental mammalsQ28776646
Genome-scale approaches to resolving incongruence in molecular phylogeniesQ29547249
A molecular timescale for vertebrate evolutionQ29547791
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolutionQ29547828
Comparative analyses of multi-species sequences from targeted genomic regionsQ29614436
Inferring nonneutral evolution from human-chimp-mouse orthologous gene triosQ29616015
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineagesQ29618516
Protein evolution with dependence among codons due to tertiary structure.Q30333235
Indels in protein-coding sequences of Euarchontoglires constrain the rooting of the eutherian treeQ47739850
Revisiting the Glires concept--phylogenetic analysis of nuclear sequencesQ47739860
Large-scale search for genes on which positive selection may operateQ48064461
Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian MethodsQ57045404
Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theoryQ59411785
Tests for positive selection on immune and reproductive genes in closely related species of the murine genus musQ73069252
Adaptive evolution in the photosensory domain of phytochrome A in early angiospermsQ73459266
Frequent false detection of positive selection by the likelihood method with branch-site modelsQ79763451
Reanalysis of Murphy et al.'s data gives various mammalian phylogenies and suggests overcredibility of Bayesian treesQ30910727
Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.Q31706725
Molecular evidence for the early divergence of placental mammalsQ33784258
Molecular dating and biogeography of the early placental mammal radiation.Q33950412
Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta).Q34291816
The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and EutheriaQ34416729
Inference of selection from multiple species alignmentsQ34998364
The loss of the hemoglobin H2S-binding function in annelids from sulfide-free habitats reveals molecular adaptation driven by Darwinian positive selection.Q35022334
Maximum likelihood methods for detecting adaptive evolution after gene duplication.Q35167155
An examination of the generation-time effect on molecular evolutionQ36667239
False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virusQ45667557
Phylogenetic estimation of context-dependent substitution rates by maximum likelihoodQ46754566
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectpigQ787
domesticationQ11395
P304page(s)2
P577publication date2005-01-01
P1433published inBMC BiologyQ2545642
P1476titleComparative analysis of protein coding sequences from human, mouse and the domesticated pig
P478volume3

Reverse relations

cites work (P2860)
Q28764043A phylogenomic study of human, dog, and mouse
Q37759974Advances in porcine genomics and proteomics--a toolbox for developing the pig as a model organism for molecular biomedical research
Q33339383Assessing the evolutionary impact of amino acid mutations in the human genome
Q42149039Breakpoint graphs and ancestral genome reconstructions
Q30855591Causes and evolutionary consequences of primordial germ-cell specification mode in metazoans
Q89567688Comparative analyses of longissimus muscle miRNAomes reveal microRNAs associated with differential regulation of muscle fiber development between Tongcheng and Yorkshire pigs
Q40901852Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome
Q44072920Dietary supplementation with Bifidobacterium lactis NCC2818 from weaning reduces local immunoglobulin production in lymphoid-associated tissues but increases systemic antibodies in healthy neonates.
Q34509831Dissecting the role of milk components on gut microbiota composition
Q33633479Estimates of positive Darwinian selection are inflated by errors in sequencing, annotation, and alignment.
Q47842190Evidence of a major role of GP64 in group I alphabaculovirus evolution
Q28757247Expressed sequence tags as a tool for phylogenetic analysis of placental mammal evolution
Q33279940Genetic resources, genome mapping and evolutionary genomics of the pig (Sus scrofa)
Q44706719High-resolution structural model of porcine P2 myelin membrane protein with associated fatty acid ligand: fact or artifact?
Q28681285How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome
Q33286950Improving model predictions for RNA interference activities that use support vector machine regression by combining and filtering features
Q33509926Molecular phylogeny of Arthrotardigrada (Tardigrada).
Q35839904Neonatal colonisation expands a specific intestinal antigen-presenting cell subset prior to CD4 T-cell expansion, without altering T-cell repertoire
Q36857726Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
Q40499958Phenotypic and functional analysis of monocyte populations in cattle peripheral blood identifies a subset with high endocytic and allogeneic T-cell stimulatory capacity.
Q57568122Phylogenetic analysis of 1.5 Mbp and platypus EST data refute the Marsupionta hypothesis and unequivocally support Monotremata as sister group to Marsupialia/Placentalia
Q35179266PigGIS: Pig Genomic Informatics System
Q24529105Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
Q42686049Prospecting for pig single nucleotide polymorphisms in the human genome: have we struck gold?
Q36113710Pyoverdine receptor: a case of positive Darwinian selection in Pseudomonas aeruginosa
Q28710006Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms
Q37373110The effect of branch lengths on phylogeny: an empirical study using highly conserved orthologs from mammalian genomes
Q47118296The evolution of the macrophage-specific enhancer (Fms intronic regulatory element) within the CSF1R locus of vertebrates
Q33942626The evolutionary fate of MULE-mediated duplications of host gene fragments in rice
Q34113617Towards the establishment of a porcine model to study human amebiasis
Q33400860Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
Q37719307Transgenic pigs as models for translational biomedical research
Q42615818Two novel mouse genes mapped to chromosome Yp are expressed specifically in spermatids.
Q36431667Up-regulated miR-145 expression inhibits porcine preadipocytes differentiation by targeting IRS1.