GenBank

scientific article (published 2006-01-01)

GenBank is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/nar/BensonKLOW06
P356DOI10.1093/NAR/GKJ157
P3181OpenCitations bibliographic resource ID3335890
P932PMC publication ID1347519
P698PubMed publication ID16381837

P50authorDavid J. LipmanQ5235454
Dennis A. BensonQ21056914
Ilene Karsch-MizrachiQ28360136
James OstellQ28360138
David L. WheelerQ105061282
P2860cites workGapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
DDBJ in collaboration with mass-sequencing teams on annotationQ24793358
GenBankQ24795080
CDD: a Conserved Domain Database for protein classificationQ24795306
The EMBL Nucleotide Sequence DatabaseQ24796321
Database resources of the National Center for Biotechnology InformationQ25254988
dbEST--database for "expressed sequence tags"Q29547785
Functional annotation of a full-length mouse cDNA collectionQ29618568
Protein sequence similarity searches using patterns as seedsQ34675542
Genomic sequence sampling: a strategy for high resolution sequence-based physical mapping of complex genomesQ46956463
P433issueDatabase issue
P407language of work or nameEnglishQ1860
P921main subjectGenBankQ901755
P304page(s)D16-20
P577publication date2006-01-01
P1433published inNucleic Acids ResearchQ135122
P1476titleGenBank
P478volume34

Reverse relations

cites work (P2860)
Q246547013-hydroxypropionyl-coenzyme A dehydratase and acryloyl-coenzyme A reductase, enzymes of the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle in the Sulfolobales
Q56550464A Single-step Multiplex Quantitative Real Time Polymerase Chain Reaction Assay for Hepatitis C Virus Genotypes
Q60959728A broadly applicable COI primer pair and an efficient single-tube amplicon library preparation protocol for metabarcoding
Q24646170A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis
Q33424450A global public database of disease vector and reservoir distributions
Q37109854A hierarchical model for incomplete alignments in phylogenetic inference
Q47072824A large-scale functional approach to uncover human genes and pathways in Drosophila
Q30838656A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
Q111946343A new population of the northern quoll (Dasyurus hallucatus) on the edge of the Little Sandy Desert, Western Australia
Q41820258A novel filamentous phage from the deep-sea bacterium Shewanella piezotolerans WP3 is induced at low temperature
Q33308249A primer on python for life science researchers
Q30011014A statistical phylogeography of influenza A H5N1.
Q45886509A systematic study of the function of the human beta-globin introns on the expression of the human coagulation factor IX in cultured Chinese hamster ovary cells.
Q33296918A transcriptomic analysis of the adult stage of the bovine lungworm, Dictyocaulus viviparus
Q21266557Abundance and functional diversity of riboswitches in microbial communities
Q33504227Achievements and new knowledge unraveled by metagenomic approaches
Q21145011Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola
Q41919041Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction
Q33730214An Allergen Portrait Gallery: Representative Structures and an Overview of IgE Binding Surfaces
Q42075534An evaluation of LSU rDNA D1-D2 sequences for their use in species identification
Q33260092An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes.
Q37365705Analysis of Borrelia burgdorferi genotypes in patients with Lyme arthritis: High frequency of ribosomal RNA intergenic spacer type 1 strains in antibiotic-refractory arthritis
Q42216087Analysis of SSR dynamics in chloroplast genomes of Brassicaceae family
Q30886589Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae
Q28274312Analysis of one million base pairs of Neanderthal DNA
Q33294661Ancient intron insertion sites and palindromic genomic duplication evolutionally shapes an elementally functioning membrane protein family
Q35840020Antimicrobial susceptibilities of Peptostreptococcus anaerobius and the newly described Peptostreptococcus stomatis isolated from various human sources
Q35221009Application of SmartGene IDNS software to partial 16S rRNA gene sequences for a diverse group of bacteria in a clinical laboratory
Q51349734Application of universal stress proteins in probing the dynamics of potent degraders in complex terephthalate metagenome.
Q33268696Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
Q17485682Assembling a global database of malaria parasite prevalence for the Malaria Atlas Project
Q33464405Assessment of cellulolytic microorganisms in soils of Nevados Park, Colombia
Q59156721Association ofStreptococcus pluranimaliumwith valvular endocarditis and septicaemia in adult broiler parents
Q40282792BACE1 gene promoter is differentially regulated: detection of a novel promoter region for its cell type-specific regulation
Q37135597BCL::Align-sequence alignment and fold recognition with a custom scoring function online
Q40080219Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences
Q33333147Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites
Q36687906Bioinformatics for study of autoimmunity
Q35669804Biotin uptake in prokaryotes by solute transporters with an optional ATP-binding cassette-containing module.
Q35221017Borrelia burgdorferi genetic markers and disseminated disease in patients with early Lyme disease
Q52337542Brain-Derived Neurotrophic Factor Elevates Activating Transcription Factor 4 (ATF4) in Neurons and Promotes ATF4-Dependent Induction of Sesn2.
Q46003438CAGE-TSSchip: promoter-based expression profiling using the 5'-leading label of capped transcripts.
Q24646173CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
Q36491129Centroid estimation in discrete high-dimensional spaces with applications in biology
Q38645465Changes in phytophagous insect host ranges following the invasion of their community: Long-term data for fruit flies
Q54743614Characterisation of freshwater and marine cyanobacteria in the Hokianga region, Northland, New Zealand
Q47161130Characterization and Identification of Cryptic Biopeptides in Carya illinoinensis (Wangenh K. Koch) Storage Proteins
Q34591163Classical nuclear localization signals: definition, function, and interaction with importin alpha
Q33322945ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Q36361818Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM)
Q34780117Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize
Q46680383Comparative genomics and experimental characterization of N-acetylglucosamine utilization pathway of Shewanella oneidensis
Q33270381Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome
Q59789420Comparative shotgun metagenomic data of the silkworm Bombyx mori gut microbiome
Q44504962Compensatory evolution in mitochondrial tRNAs navigates valleys of low fitness
Q56017797Complications in the study of ancient tuberculosis: non-specificity of IS6110 PCRs
Q21145667Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes
Q30360853Computational approaches for rational design of proteins with novel functionalities
Q51909446Computational approaches to insertional RNA editing.
Q43772299Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize
Q30156860Computational protein design: validation and possible relevance as a tool for homology searching and fold recognition
Q33312113Conserved and species-specific alternative splicing in mammalian genomes.
Q36660770Constraint and turnover in sex-biased gene expression in the genus Drosophila
Q35946576Conversion and compensatory evolution of the gamma-crystallin genes and identification of a cataractogenic mutation that reverses the sequence of the human CRYGD gene to an ancestral state
Q43077540Coryneform bacteria associated with canine otitis externa
Q27653424Crystal structure of the parasite inhibitor chagasin in complex with papain allows identification of structural requirements for broad reactivity and specificity determinants for target proteases
Q27667025Crystal structures of the apo form of β-fructofuranosidase from Bifidobacterium longum and its complex with fructose
Q37628677Current status and future perspectives on molecular and serological methods in diagnostic mycology
Q24684627DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
Q21284220DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
Q31037308DNA-based faecal dietary analysis: a comparison of qPCR and high throughput sequencing approaches
Q42368746Data sharing: how much doesn't get submitted to GenBank?
Q24683601Database resources of the National Center for Biotechnology Information
Q28730625Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns
Q33295443Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton
Q31127104Detection of RNA structures in porcine EST data and related mammals.
Q57251292Detection of anoxia-responsive genes in cultured cells of the rainbow trout Oncorhynchus mykiss (Walbaum), using an optimized, genome-wide oligoarray
Q46088044Development and in vitro evaluation of an Escherichia coli probiotic able to inhibit the growth of pathogenic Escherichia coli K88.
Q54521508Development of a DNA microarray for the simultaneous detection and genotyping of noroviruses.
Q33895964Discovery of novel intermediate forms redefines the fungal tree of life
Q33288227Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima
Q28754906Diversity and stratification of archaea in a hypersaline microbial mat
Q92188025Drivers and patterns of microbial community assembly in a Lyme disease vector
Q38442424EMBL Nucleotide Sequence Database in 2006.
Q25256713EMBL Nucleotide Sequence Database: developments in 2005
Q92860220Early Pastoral Economies and Herding Transitions in Eastern Eurasia
Q24685102Early evolution of histone mRNA 3' end processing
Q56433686Effects of barred owl (Strix varia) range expansion on Haemoproteus parasite assemblage dynamics and transmission in barred and northern spotted owls (Strix occidentalis caurina)
Q36250175Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell
Q38302744Enhancing the latent nucleotide triphosphate flexibility of the glucose-1-phosphate thymidylyltransferase RmlA.
Q33327361Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
Q28247479Enzymatic methods for glyco(diversification/randomization) of drugs and small molecules
Q43975683Epistasis as the primary factor in molecular evolution
Q36796745Epithelial-to-mesenchymal transition in early transplant tubulointerstitial damage
Q30423291Estimating the rate of irreversibility in protein evolution.
Q36421873Evolution of acetoclastic methanogenesis in Methanosarcina via horizontal gene transfer from cellulolytic Clostridia
Q21203782Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation
Q36740032Evolution of protein families: is it possible to distinguish between domains of life?
Q42159338Evolution of the iron-responsive element
Q30155152Evolutionary and molecular aspects of Indian tomato leaf curl virus coat protein
Q33309958Exchanging murine and human immunoglobulin constant chains affects the kinetics and thermodynamics of antigen binding and chimeric antibody autoreactivity
Q30315951Expression and Localization of Lung Surfactant Proteins in Human Testis
Q28485270Expression of Paracoccidioides brasiliensis AMY1 in a Histoplasma capsulatum amy1 mutant, relates an α-(1,4)-amylase to cell wall α-(1,3)-glucan synthesis
Q34007265Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon
Q36062958Extensive parallelism in protein evolution
Q57010700Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic
Q56286645FaBox: an online toolbox for fasta sequences
Q33266309Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila
Q39935085Formulation and characterization of catalase in albumin microspheres
Q35527797From benchtop to desktop: important considerations when designing amplicon sequencing workflows
Q64226704Fungal Species Diversity in French Bread Sourdoughs Made of Organic Wheat Flour
Q38384488GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis
Q79484297GenBank
Q22679411GenSeq: An updated nomenclature and ranking for genetic sequences from type and non-type sources
Q36949593Gene trap mutagenesis: a functional genomics approach towards reproductive research
Q40242235Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Q33897090Genetic characterization of human immunodeficiency virus type 1 transmission in the Middle East and North Africa
Q37110999Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
Q65000582Genetic segregation of airway disease traits despite redundancy of calcium-activated chloride channel family members.
Q34628398Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology
Q41852700Genomic analysis indicates the presence of an asymmetric bilayer outer membrane in planctomycetes and verrucomicrobia
Q41923048Genomic diversity and phylogeography of norovirus in China
Q27489079HCV genotyping using statistical classification approach
Q27490985HLA Class I Restriction as a Possible Driving Force for Chikungunya Evolution
Q28767365Heterogeneous genomic molecular clocks in primates
Q36105257High diversity of picornaviruses in rats from different continents revealed by deep sequencing
Q43222746High genetic relatedness among Mycobacterium avium strains isolated from pigs and humans revealed by comparative IS1245 RFLP analysis
Q35786071Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters
Q33309492Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses
Q104752391Host-Associated Quantitative Abundance Profiling Reveals the Microbial Load Variation of Root Microbiome
Q47684082Human parotid and submandibular glands express and secrete surfactant proteins A, B, C and D.
Q46205278IMGT, the International ImMunoGeneTics Information System for Immunoinformatics : methods for querying IMGT databases, tools, and web resources in the context of immunoinformatics
Q33647388Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana
Q33299935Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties
Q57781761Identification, Occurrence, and Validation of DRE and ABRECis-Regulatory Motifs in the Promoter Regions of Genes ofArabidopsis thaliana
Q92178493In Situ Collection and Preservation of Intact Microcystis Colonies to Assess Population Diversity and Microcystin Quotas
Q33322197In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches
Q33288972Indexing strategies for rapid searches of short words in genome sequences.
Q30010997Influenza A H5N1 immigration is filtered out at some international borders
Q24314111Interactions between PBEF and oxidative stress proteins--a potential new mechanism underlying PBEF in the pathogenesis of acute lung injury
Q39115868Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes
Q41442465Isolation and screening of lipolytic fungi from coastal waters of the southern caspian sea (north of iran).
Q31069236Linking publication, gene and protein data
Q53610765Long-term cultured neonatal islet cell clusters demonstrate better outcomes for reversal of diabetes: in vivo and molecular profiles.
Q37055944MCAM: a database to accelerate the identification of functional cell adhesion molecules
Q24673516MEGAN analysis of metagenomic data
Q41845448Malonic semialdehyde reductase, succinic semialdehyde reductase, and succinyl-coenzyme A reductase from Metallosphaera sedula: enzymes of the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle in Sulfolobales
Q45410457Mapping antigenic diversity and strain specificity of mumps virus: a bioinformatics approach
Q37418082Metabarcoding avian diets at airports: implications for birdstrike hazard management planning
Q30362639Modeling of the potential coiled-coil structure of snapin protein and its interaction with SNARE complex.
Q62489236Molecular detection of hemogregarines and haemosporidians in Brazilian free-living testudines
Q37713526Molecular epidemiology of contemporary G2P[4] human rotaviruses cocirculating in a single U.S. community: footprints of a globally transitioning genotype
Q58647403Multiple Sequence Alignment Using a Genetic Algorithm and GLOCSA
Q33332467Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation
Q46957024N-terminal anchor in surface immunogenic protein of Streptococcus agalactiae and its influence on immunity elicitation.
Q41812361NFU-Enabled FASTA: moving bioinformatics applications onto wide area networks
Q111946534New populations of the black-flanked rock-wallaby (Petrogale lateralis) from the Little Sandy Desert and Murchison, Western Australia
Q34498285Novel RNA variants in colorectal cancers
Q43927777Observations on the incidence and aetiology of valvular endocarditis in broiler breeders and detection of a newly described taxon of Pasteurellaceae, Avibacterium endocarditidis
Q42701717Obstructive sleep apnea and rhonchopathy are associated with downregulation of trefoil factor family peptide 3 (TFF3)-Implications of changes in oral mucus composition.
Q33826430Ovine ruminal microbes are capable of biotransforming hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).
Q28392489PATRIC: the VBI PathoSystems Resource Integration Center
Q36993660Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish Turbot (Scophthalmus maximus)-rearing farm and antagonize Vibrio anguillarum under different growth conditions
Q107759834Phylogenetic analysis of selected representatives of the genus Erica based on the genes encoding the DNA-dependent RNA polymerase I
Q47740166Phylogenetic analysis of the chromate ion transporter (CHR) superfamily
Q36965168Phylogenetic distances are encoded in networks of interacting pathways
Q45194907Phylogeny and systematics of deep-sea sea pens (Anthozoa: Octocorallia: Pennatulacea).
Q35179266PigGIS: Pig Genomic Informatics System
Q28068220Plant Microbe Interactions in Post Genomic Era: Perspectives and Applications
Q37024705Practical applications of bacterial functional genomics.
Q37014089Predicting protein function from sequence and structure
Q51777528Protein dynamics of a beta-sheet protein.
Q24675776Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
Q36168642Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates
Q44866585Putative and unique gene sequence utilization for the design of species specific probes as modeled by Lactobacillus plantarum
Q24684227REBASE--enzymes and genes for DNA restriction and modification
Q96126845Rapid range shifts and megafaunal extinctions associated with late Pleistocene climate change
Q30993346Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation
Q30436271Repeat-associated plasticity in the Helicobacter pylori RD gene family
Q91932298Revisiting the Evolution and Taxonomy of Clostridia, a Phylogenomic Update
Q33407974Robust methods for accurate diagnosis using pan-microbiological oligonucleotide microarrays
Q35854799SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas
Q28661421Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages
Q90677770Scratching the Surface of an Itch: Molecular Evolution of Aculeata Venom Allergens
Q40408421Selective evolution of Toll-like receptors 3, 7, 8, and 9 in bats
Q58823809Selenium Mobilization byPseudomonas aeruginosa(SNT-SG1) Isolated from Seleniferous Soils from India
Q95561092Sequence and 3D structure based analysis of TNT degrading proteins in Arabidopsis thaliana
Q27690671Sequence conservation of apolipoprotein A-I affords novel insights into HDL structure-function
Q46714288Signaling the signal, cyclic AMP-dependent protein kinase inhibition by insulin-formed H2O2 and reactivation by thioredoxin
Q35638621Small RNA and degradome sequencing reveals important microRNA function in Astragalus chrysochlorus response to selenium stimuli
Q33276943SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
Q34562298Staphylococcus aureus and Pseudomonas aeruginosa express and secrete human surfactant proteins
Q48054252Stereoselective hydrolysis of aryl-substituted dihydropyrimidines by hydantoinases
Q30835132Strainer: software for analysis of population variation in community genomic datasets.
Q33319898Structural and functional diversification in the teleost S100 family of calcium-binding proteins
Q33283688Swimming pools and fungi: an environmental epidemiology survey in Italian indoor swimming facilities
Q42288189SwissRegulon: a database of genome-wide annotations of regulatory sites
Q48076362TEnest: automated chronological annotation and visualization of nested plant transposable elements
Q33266934TaxMan: a taxonomic database manager
Q21090116Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
Q36138602Temporal Evolutionary Dynamics of Norovirus GII.4 Variants in China between 2004 and 2015.
Q58243648Temporal Scaling Behavior of Avian Influenza A (H5N1): The Multifractal Detrended Fluctuation Analysis
Q30785785Testing the competition-colonization trade-off with a 32-year study of a saxicolous lichen community
Q30360130The (in)dependence of alternative splicing and gene duplication
Q24675754The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species
Q31115661The ENCODEdb portal: simplified access to ENCODE Consortium data
Q34027401The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information
Q28261087The IMGT/HLA and IPD databases
Q58046207The Immunoglobulin Heavy Chain Constant Region Affects Kinetic and Thermodynamic Parameters of Antibody Variable Region Interactions with Antigen
Q33322613The Innate Immune Database (IIDB)
Q40104477The Sulfolobus database
Q35179246The UCSC genome browser database: update 2007.
Q37052271The classical nuclear localization signal receptor, importin-alpha, is required for efficient transition through the G1/S stage of the cell cycle in Saccharomyces cerevisiae
Q33470683The development of a comparison approach for Illumina bead chips unravels unexpected challenges applying newest generation microarrays
Q48116787The genetic variation of the human HMGB1 gene
Q34551463The identification of novel ovarian proteases through the use of genomic and bioinformatic methodologies
Q35253029The mouse Gene Expression Database (GXD): 2007 update
Q30362615The network of sequence flow between protein structures.
Q91045461The subgingival microbiome associated with periodontitis in type 2 diabetes mellitus
Q34277155Using knowledge fusion to analyze avian influenza H5N1 in East and Southeast Asia
Q33330194VariVis: a visualisation toolkit for variation databases
Q35914196Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence
Q64294972When to use next generation sequencing or diagnostic PCR in diet analyses
Q27496569Whole genome molecular phylogeny of large dsDNA viruses using composition vector method
Q24676843Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation
Q33381615Width of gene expression profile drives alternative splicing
Q35608474dbRES: a web-oriented database for annotated RNA editing sites
Q33263147methBLAST and methPrimerDB: web-tools for PCR based methylation analysis
Q34487194piRNAQuest: searching the piRNAome for silencers
Q24680302siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
Q35630321xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features

Search more.