| scholarly article | Q13442814 |
| P356 | DOI | 10.1016/J.MARGEN.2015.08.007 |
| P8608 | Fatcat ID | release_4fxvvx2dsfghxeurhakrsdg7f4 |
| P3181 | OpenCitations bibliographic resource ID | 370431 |
| P698 | PubMed publication ID | 26452301 |
| P5875 | ResearchGate publication ID | 282731990 |
| P50 | author | Bo Barker Jørgensen | Q95239175 |
| B. B. Jørgensen | Q58442938 | ||
| Andrea Torti | Q58863486 | ||
| Mark A. Lever | Q35495692 | ||
| P2093 | author name string | Mark Alexander Lever | |
| Andrea Torti | |||
| P2860 | cites work | DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs | Q22065463 |
| Extracellular DNA Required for Bacterial Biofilm Formation | Q22065541 | ||
| Prokaryotes: the unseen majority | Q22066200 | ||
| Instability and decay of the primary structure of DNA | Q22122361 | ||
| Geologically ancient DNA: fact or artefact? | Q22162503 | ||
| Pyrosequencing enumerates and contrasts soil microbial diversity | Q24616826 | ||
| Ancient DNA | Q24675497 | ||
| Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions | Q24678260 | ||
| Patterns of damage in genomic DNA sequences from a Neandertal | Q24684328 | ||
| Microbial diversity in the deep sea and the underexplored "rare biosphere" | Q24685531 | ||
| Life under extreme energy limitation: a synthesis of laboratory- and field-based investigations | Q26828792 | ||
| AGAINST ALL ODDS:The Survival Strategies of Deinococcus radiodurans | Q28109622 | ||
| The economics of ribosome biosynthesis in yeast | Q28131645 | ||
| Rate of depurination of native deoxyribonucleic acid | Q28243811 | ||
| Mechanisms of, and barriers to, horizontal gene transfer between bacteria | Q28270244 | ||
| Molecular coproscopy: dung and diet of the extinct ground sloth Nothrotheriops shastensis | Q28276639 | ||
| Major viral impact on the functioning of benthic deep-sea ecosystems | Q28292393 | ||
| Hydroxylation of deoxyguanosine at the C-8 position by ascorbic acid and other reducing agents | Q28367039 | ||
| A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types | Q28647288 | ||
| Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA | Q28649358 | ||
| Horizontal transfer of short and degraded DNA has evolutionary implications for microbes and eukaryotic sexual reproduction | Q28650387 | ||
| Identification of photosynthetic plankton communities using sedimentary ancient DNA and their response to late-Holocene climate change on the Tibetan Plateau | Q28654623 | ||
| Controls on the molecular and carbon isotopic composition of organic matter deposited in a Kimmeridgian euxinic shelf sea: evidence for preservation of carbohydrates through sulfurisation | Q63972129 | ||
| Release of transforming plasmid and chromosomal DNA from two cultured soil bacteria | Q67862693 | ||
| The abasic site as a challenge to DNA polymerase. A nuclear magnetic resonance study of G, C and T opposite a model abasic site | Q68790231 | ||
| Heat-induced deamination of cytosine residues in deoxyribonucleic acid | Q69352442 | ||
| Hypoxanthine in deoxyribonucleic acid: generation by heat-induced hydrolysis of adenine residues and release in free form by a deoxyribonucleic acid glycosylase from calf thymus | Q70658641 | ||
| Acinetobacter calcoaceticus liberates chromosomal DNA during induction of competence by cell lysis | Q72275713 | ||
| Small ribosomal RNA content in marine Proteobacteria during non-steady-state growth | Q73091734 | ||
| Cations as mediators of the adsorption of nucleic acids on clay surfaces in prebiotic environments | Q73926614 | ||
| Kinetics and Mechanisms for the Cleavage and Isomerization of the Phosphodiester Bonds of RNA by Brønsted Acids and Bases | Q77646667 | ||
| Miocene DNA sequences - a dream come true? | Q80506511 | ||
| Geochemistry: A rusty carbon sink | Q83592390 | ||
| Biofilm formation by haloarchaea | Q87430828 | ||
| Long livestock farming history and human landscape shaping revealed by lake sediment DNA. | Q46328603 | ||
| A Comparative study of Fe(II) and Fe(III) interactions with DNA duplex: major and minor grooves bindings | Q46532780 | ||
| A procedure for separate recovery of extra- and intracellular DNA from a single marine sediment sample. | Q46875684 | ||
| Synoptic determination of living/dead and active/dormant bacterial fractions in marine sediments. | Q46934212 | ||
| Degradation of ancient DNA. | Q47179703 | ||
| Preservation potential of ancient plankton DNA in Pleistocene marine sediments | Q47269691 | ||
| Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor? | Q47291396 | ||
| Massive expansion of marine archaea during a mid-Cretaceous oceanic anoxic event | Q47619134 | ||
| Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms | Q47770828 | ||
| Neisseria gonorrhoeae secretes chromosomal DNA via a novel type IV secretion system | Q48147768 | ||
| Long-term persistence of bacterial DNA. | Q48212174 | ||
| Environmental DNA. | Q51566354 | ||
| A surface-mediated origin of the RNA world: biogenic activities of clay-adsorbed RNA molecules. | Q54491281 | ||
| Cycling of extracellular DNA in the soil environment | Q57070154 | ||
| Extracellular DNA plays a key role in deep-sea ecosystem functioning | Q57087921 | ||
| Paper II - Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies | Q57178165 | ||
| Nucleic acid concentrations (DNA, RNA) in the continental and deep-sea sediments of the eastern Mediterranean: relationships with seasonally varying organic inputs and bacterial dynamics | Q57235026 | ||
| Oxygenation and organic-matter preservation in marine sediments: Direct experimental evidence from ancient organic carbon–rich deposits | Q58063136 | ||
| Patterns of Microbially Driven Carbon Cycling in the Ocean: Links between Extracellular Enzymes and Microbial Communities | Q59051038 | ||
| Preservation of organic matter in sediments promoted by iron | Q59065776 | ||
| Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment | Q59076277 | ||
| Chlorobiaceae in Palaeozoic seas revealed by biological markers, isotopes and geology | Q59091327 | ||
| Effects of pH, ionic strength, and solutes on DNA adsorption by andosols | Q59423381 | ||
| Exploring preserved fossil dinoflagellate and haptophyte DNA signatures to infer ecological and environmental changes during deposition of sapropel S1 in the eastern Mediterranean | Q60164983 | ||
| Source-specific variability in post-depositional DNA preservation with potential implications for DNA based paleoecological records | Q60164986 | ||
| Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea | Q60164991 | ||
| Extracellular DNA can preserve the genetic signatures of present and past viral infection events in deep hypersaline anoxic basins | Q28659927 | ||
| Bacterial natural transformation by highly fragmented and damaged DNA | Q28661224 | ||
| mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters | Q28681066 | ||
| Evolution of the plankton paleome in the Black Sea from the Deglacial to Anthropocene | Q28686151 | ||
| Ancient DNA complements microfossil record in deep-sea subsurface sediments | Q28690340 | ||
| The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils | Q28713497 | ||
| Authenticated DNA from ancient wood remains | Q28731591 | ||
| Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments | Q28741432 | ||
| Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics | Q28742601 | ||
| Road blocks on paleogenomes--polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA | Q28749306 | ||
| Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments | Q28768246 | ||
| Evolutionary diversity of eukaryotic small-subunit rRNA genes | Q28776348 | ||
| DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA | Q29614760 | ||
| Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG | Q29616532 | ||
| Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale | Q29617333 | ||
| Marine subsurface eukaryotes: the fungal majority. | Q30993730 | ||
| Simplified method for dissolved DNA determination in aquatic environments. | Q33229244 | ||
| DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments | Q33232059 | ||
| Diversity and metabolism of marine bacteria cultivated on dissolved DNA. | Q33276822 | ||
| Feast and famine--microbial life in the deep-sea bed. | Q33298072 | ||
| Damage and degradation rates of extracellular DNA in marine sediments: implications for the preservation of gene sequences | Q33353571 | ||
| Late-Holocene succession of dinoflagellates in an Antarctic fjord using a multi-proxy approach: paleoenvironmental genomics, lipid biomarkers and palynomorphs. | Q33465262 | ||
| Preservation, origin and genetic imprint of extracellular DNA in permanently anoxic deep-sea sediments. | Q33771127 | ||
| mapDamage: testing for damage patterns in ancient DNA sequences | Q33928585 | ||
| Characterization of a histone-like protein extracted from yeast mitochondria | Q33971978 | ||
| Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity | Q34019442 | ||
| DNA Glycosylases, Endonucleases for Apurinic/Apyrimidinic Sites, and Base Excision-Repair | Q34051153 | ||
| Microbial extracellular enzymes and the marine carbon cycle | Q34165235 | ||
| Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats | Q34194521 | ||
| Cyclobutane pyrimidine dimers and (6-4) photoproducts block polymerization by DNA polymerase I. | Q34201465 | ||
| A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability | Q34271233 | ||
| Global distribution of microbial abundance and biomass in subseafloor sediment | Q34296356 | ||
| Bacterial vesicles in marine ecosystems | Q34396893 | ||
| Predation on prokaryotes in the water column and its ecological implications | Q34426183 | ||
| Biomarker evidence for green and purple sulphur bacteria in a stratified Palaeoproterozoic sea. | Q34457305 | ||
| Extracellular DNA release by undomesticated Bacillus subtilis is regulated by early competence | Q34469849 | ||
| Deep sequencing of subseafloor eukaryotic rRNA reveals active Fungi across marine subsurface provinces | Q34590000 | ||
| Taq DNA polymerase blockage at pyrimidine dimers | Q34594225 | ||
| Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient | Q34697000 | ||
| Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. | Q34792388 | ||
| Release of extracellular transformable plasmid DNA from Escherichia coli cocultivated with algae | Q34992675 | ||
| Ancient biomolecules: their origins, fossilization, and role in revealing the history of life | Q35119227 | ||
| Damage and repair of ancient DNA. | Q36062343 | ||
| Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida | Q36072269 | ||
| Degradation of dead microbial biomass in a marine sediment | Q36084059 | ||
| Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction | Q36482950 | ||
| The enzymology of apurinic/apyrimidinic endonucleases | Q36595608 | ||
| Release and persistence of extracellular DNA in the environment | Q36981837 | ||
| Extracellular DNA metabolism in Haloferax volcanii | Q37594316 | ||
| Spontaneous deamination of cytosine and 5-methylcytosine residues in DNA and replacement of 5-methylcytosine residues with cytosine residues | Q37924470 | ||
| Next-generation sequencing offers new insights into DNA degradation | Q38003819 | ||
| DNA damage reduces Taq DNA polymerase fidelity and PCR amplification efficiency | Q38433928 | ||
| Microbial control of the dark end of the biological pump | Q38590630 | ||
| Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment. | Q39563095 | ||
| Adsorption of DNA to sand and variable degradation rates of adsorbed DNA | Q39926714 | ||
| Isolation of nucleic acids and cultures from fossil ice and permafrost | Q40325388 | ||
| Role of extracellular DNA in initial bacterial adhesion and surface aggregation | Q40527167 | ||
| Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein | Q40575898 | ||
| Simultaneous recovery of extracellular and intracellular DNA suitable for molecular studies from marine sediments | Q40898966 | ||
| Degradation and turnover of extracellular DNA in marine sediments: ecological and methodological considerations. | Q41031595 | ||
| High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments | Q41114502 | ||
| Amplification and analysis of Miocene plant fossil DNA. | Q41142672 | ||
| A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy | Q41203605 | ||
| Uptake and processing of DNA by Acinetobacter calcoaceticus--a review | Q41532719 | ||
| DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential | Q41628248 | ||
| Biogeography of Rhizobium radiobacter and distribution of associated temperate phages in deep subseafloor sediments | Q42243130 | ||
| Pelagic-benthic coupling and diagenesis of nucleic acids in a deep-sea continental margin and an open-slope system of the Eastern Mediterranean. | Q42248841 | ||
| Release of bacterial DNA by marine nanoflagellates, an intermediate step in phosphorus regeneration. | Q42925824 | ||
| Extracellular DNA in single- and multiple-species unsaturated biofilms | Q42975435 | ||
| A variable genetic island specific for Neisseria gonorrhoeae is involved in providing DNA for natural transformation and is found more often in disseminated infection isolates | Q43674788 | ||
| Contribution of virus-induced lysis and protozoan grazing to benthic bacterial mortality estimated simultaneously in microcosms. | Q43901629 | ||
| 7000 years of Emiliania huxleyi viruses in the Black Sea. | Q44550094 | ||
| Unravelling ancient microbial history with community proteogenomics and lipid geochemistry. | Q44940749 | ||
| Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order Thermococcales | Q45393641 | ||
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | marine sediment | Q1898474 |
| P304 | page(s) | 185-196 | |
| P577 | publication date | 2015-12-01 | |
| P1433 | published in | Marine Genomics | Q15817003 |
| P1476 | title | Origin, dynamics, and implications of extracellular DNA pools in marine sediments | |
| P478 | volume | 24 Pt 3 |
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