The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?

scientific article

The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs? is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1093/BFGP/ELV027
P3181OpenCitations bibliographic resource ID2981685
P932PMC publication ID4812591
P698PubMed publication ID26117139
P5875ResearchGate publication ID279299963

P50authorDavid Roy SmithQ42320298
P2093author name stringDavid Roy Smith
P2860cites workThe Revised Classification of EukaryotesQ17792525
Environmental barcoding reveals massive dinoflagellate diversity in marine environmentsQ21091089
Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation ratesQ21563526
Mitochondrial DNA as a Genomic Jigsaw PuzzleQ22065865
Horizontal gene transfer in eukaryotic evolutionQ22122009
The genome sequence of Rickettsia prowazekii and the origin of mitochondriaQ22122428
Kinetoplast DNA network: evolution of an improbable structureQ24531931
Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolutionQ24561429
Rapid evolution of animal mitochondrial DNAQ24597162
Collodictyon--an ancient lineage in the tree of eukaryotesQ24621695
MITOMAP: a human mitochondrial genome database--2004 updateQ24795655
OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.Q24812478
Structure of the Yeast Mitochondrial Large Ribosomal SubunitQ27682617
Sequencing technologies - the next generationQ27860568
Sequence and organization of the human mitochondrial genomeQ27860659
Ribosome. The structure of the human mitochondrial ribosomeQ28115987
Cytoplasmic transfer in assisted reproductionQ28209331
Does constructive neutral evolution play an important role in the origin of cellular complexity? Making sense of the origins and uses of biological complexityQ28306687
Mitochondrial and plastid genome architecture: Reoccurring themes, but significant differences at the extremesQ28608546
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approachQ28678174
Use of a PCR-based approach for sequencing whole mitochondrial genomes of insects: two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans.Q52649772
Microbiology. Modern symbionts inside cells mimic organelle evolution.Q52781629
Organization and expression of algal (Chlamydomonas reinhardtii) mitochondrial DNA.Q52868667
High-quality and high-throughput massively parallel sequencing of the human mitochondrial genome using the Illumina MiSeq.Q53272797
Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresisQ70918189
Complete mitochondrial genome amplificationQ72702971
The End of the Circle for Yeast Mitochondrial DNAQ85072848
The half-life of DNA in bone: measuring decay kinetics in 158 dated fossilsQ28713497
Protocol dependence of sequencing-based gene expression measurementsQ28740405
Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversionQ28744147
No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variationQ28768191
Animal mitochondrial genomesQ29547362
Automatic annotation of organellar genomes with DOGMAQ29547640
Sequence and gene organization of mouse mitochondrial DNAQ29618227
Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genomeQ29618228
A case for evolutionary genomics and the comprehensive examination of sequence biodiversity.Q30327598
Maternal transmission, sex ratio distortion, and mitochondriaQ30662223
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencingQ30833097
Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent™ PGM™Q30940437
Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data.Q31158718
Sequencing complete mitochondrial and plastid genomesQ33280989
A universal DNA mini-barcode for biodiversity analysisQ33333964
A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strainsQ33848880
Mitochondrial DNA: a tool for populational genetics studiesQ33913863
The complete DNA sequence of the mitochondrial genome of Podospora anserina.Q34036323
Diversity and reductive evolution of mitochondria among microbial eukaryotesQ34096281
Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life.Q34157495
DNA analysis of ancient dogs of the Americas: identifying possible founding haplotypes and reconstructing population histories.Q34455185
Emerging technologies in DNA sequencingQ34474513
RNA-Seq data: a goldmine for organelle researchQ34555171
Systematically fragmented genes in a multipartite mitochondrial genome.Q34559682
MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotesQ34636052
Mitochondrial originsQ34693491
Evolution of linear chromosomes and multipartite genomes in yeast mitochondria.Q35017872
A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins: using the latest advances in ancient genomics, the mitochondrial genome sequence of a 400,000-year-old hominin has been decipheredQ35140592
Mitochondrial genome diversity: evolution of the molecular architecture and replication strategy.Q35191630
Forensics and Mitochondrial DNA: Applications, Debates, and FoundationsQ35550624
First complete mitochondrial genome sequence from a box jellyfish reveals a highly fragmented linear architecture and insights into telomere evolutionQ35711714
Buying in to bioinformatics: an introduction to commercial sequence analysis software.Q35848765
Making your genbank entry countQ36074932
Mitochondrial evolution.Q36192920
Mitochondrial DNA and diseaseQ36194900
Pronounced structural similarities between the small subunit ribosomal RNA genes of wheat mitochondria and Escherichia coliQ36247431
Mutation pressure and the evolution of organelle genomic architectureQ36429959
Isolation and characterization of animal mitochondrial DNA.Q36721205
Has the endosymbiont hypothesis been proven?Q37066187
GOBASE: an organelle genome databaseQ37202708
Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structureQ37208872
Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methodsQ37340436
Organization and expression of organellar genomes.Q37685822
Using plants to elucidate the mechanisms of cytonuclear co-evolutionQ38366606
A World Wide Web (WWW) server database engine for an organelle database, MitoDatQ38460753
Crossing the prokaryote–eucaryote border: endosymbiosis or continuous development?Q39805916
Replication of animal mitochondrial DNA.Q40103664
Mitochondrial genome diversity and the evolution of mitochondrial DNA.Q40331850
Death of the genome paperQ40403775
The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plantsQ40487579
A 7.1 kb linear DNA molecule of Theileria parva has scrambled rDNA sequences and open reading frames for mitochondrially encoded proteins.Q40790934
Isolation of mitochondrial DNA.Q41221709
The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic codeQ41364068
Evolution of extensively fragmented mitochondrial genomes in the lice of humansQ42131280
The highly reduced and fragmented mitochondrial genome of the early-branching dinoflagellate Oxyrrhis marina shares characteristics with both apicomplexan and dinoflagellate mitochondrial genomesQ42516453
Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.Q42617674
Unparalleled GC content in the plastid DNA of SelaginellaQ43272683
Massive difference in synonymous substitution rates among mitochondrial, plastid, and nuclear genes of Phaeocystis algaeQ46973084
The size and form of chromosomes are constant in the nucleus, but highly variable in bacteria, mitochondria and chloroplastsQ47291627
Not seeing the genomes for the DNA.Q48032148
Mitochondrial DNA of Chlamydomonas reinhardtii: the structure of the ends of the linear 15.8-kb genome suggests mechanisms for DNA replicationQ48104337
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectDNAQ7430
mitochondrial DNAQ27075
genomicsQ222046
biomedical investigative techniqueQ66648976
P304page(s)47-54
P577publication date2015-06-27
2016-01-01
P1433published inBriefings in functional genomicsQ26841935
P1476titleThe past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?
P478volume15

Reverse relations

cites work (P2860)
Q36775278A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae.
Q61444158Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data
Q34047307Animal Mitochondrial DNA as We Do Not Know It: mt-Genome Organization and Evolution in Nonbilaterian Lineages.
Q48317517Comments on Smith (2015)-'The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs'.
Q90353059Comparative analysis of Chlorosarcinopsis eremi mitochondrial genome with some Chlamydomonadales algae
Q55074063Comparative mitochondrial genomics of cryptophyte algae: gene shuffling and dynamic mobile genetic elements.
Q92153764Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition
Q61805362Complete Mitochondrial Genome Sequence of the Phytopathogenic Basidiomycete Ganoderma boninense Strain G3
Q90730844Complete mitochondrial genomes from transcriptomes: assessing pros and cons of data mining for assembling new mitogenomes
Q55262289Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida.
Q26750664From simple to supercomplex: mitochondrial genomes of euglenozoan protists
Q26747382Goodbye genome paper, hello genome report: the increasing popularity of 'genome announcements' and their impact on science
Q91714919Improving Species Identification of Ancient Mammals Based on Next-Generation Sequencing Data
Q31162316Imputation approach for deducing a complete mitogenome sequence from low-depth-coverage next-generation sequencing data: application to ancient remains from the Moon Pyramid, Mexico
Q57175639Integrating Genes Affecting Coronary Artery Disease in Functional Networks by Multi-OMICs Approach
Q36129109MaGelLAn 1.0: a software to facilitate quantitative and population genetic analysis of maternal inheritance by combination of molecular and pedigree information.
Q33604636MitoRS, a method for high throughput, sensitive, and accurate detection of mitochondrial DNA heteroplasmy.
Q64286879Mitochondrial genome diversity and evolution in Branchiopoda (Crustacea)
Q41691083Mitochondrial genomes of African pangolins and insights into evolutionary patterns and phylogeny of the family Manidae
Q28822019Mitogenomes from type specimens, a genotyping tool for morphologically simple species: ten genomes of agar-producing red algae
Q54190747NOVOPlasty: de novo assembly of organelle genomes from whole genome data.
Q52375104Next Generation Sequencing Methods for Diagnosis of Epilepsy Syndromes.
Q37510970Next-generation sequencing of mixed genomic DNA allows efficient assembly of rearranged mitochondrial genomes in Amolops chunganensis and Quasipaa boulengeri
Q92865143OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
Q64091757Patterns of DNA variation reveal complex evolutionary history of relict and endangered peat bog pine ()
Q42777818Pervasive, Genome-Wide Transcription in the Organelle Genomes of Diverse Plastid-Bearing Protists.
Q91861114Phylomitogenomic analyses on collembolan higher taxa with enhanced taxon sampling and discussion on method selection
Q64117276Population Genetics of Paramecium Mitochondrial Genomes: Recombination, Mutation Spectrum, and Efficacy of Selection
Q46272287Sequencing of the complete mitochondrial genome of the common raven Corvus corax (Aves: Corvidae) confirms mitogenome-wide deep lineages and a paraphyletic relationship with the Chihuahuan raven C. cryptoleucus
Q99709712Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known mitogenome
Q51731205The Nothoaspis amazoniensis Complete Mitogenome: A Comparative and Phylogenetic Analysis.
Q58765467The complete mitochondrial genome of Cymothoa indica has a highly rearranged gene order and clusters at the very base of the Isopoda clade
Q30378320The genetic diversity of chicken breeds from Jiangxi, assessed with BCDO2 and the complete mitochondrial DNA D-loop region.
Q47313696The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for co-existing respiratory supercomplexes.
Q58755426The linear mitochondrial genome of the quarantine chytrid Synchytrium endobioticum; insights into the evolution and recent history of an obligate biotrophic plant pathogen
Q92616804Tracking outbreak populations of the pepper weevil Anthonomus eugenii (Coleoptera; Curculionidae) using complete mitochondrial genomes
Q36429449Unexpectedly Streamlined Mitochondrial Genome of the Euglenozoan Euglena gracilis

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