Understanding the genetic and epigenetic architecture in complex network of rice flowering pathways

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Understanding the genetic and epigenetic architecture in complex network of rice flowering pathways is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1029934881
P356DOI10.1007/S13238-014-0068-6
P932PMC publication ID4259885
P698PubMed publication ID25103896
P5875ResearchGate publication ID264630741

P50authorChengcai ChuQ40383267
P2093author name stringDan Chen
Jun Fang
Pingrong Wang
Xiaojian Deng
Changhui Sun
P2860cites workFT protein movement contributes to long-distance signaling in floral induction of ArabidopsisQ28298624
The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plantsQ33247226
Hd3a protein is a mobile flowering signal in riceQ33343963
Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiodQ33345990
A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in riceQ33347839
Molecular control of flowering in response to day length in riceQ33355088
The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maizeQ33368639
Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signallingQ33914368
OsELF3-1, an ortholog of Arabidopsis early flowering 3, regulates rice circadian rhythm and photoperiodic floweringQ34389725
Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length responseQ34467836
Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in riceQ34597961
Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progenyQ34608787
Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivarsQ34669752
The genetic architecture of maize flowering time.Q34996049
Genetic architecture of flowering-time variation in Arabidopsis thalianaQ35065503
Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of riceQ35779884
Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of riceQ36410905
Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thalianaQ36483376
Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.Q36530504
Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in AsiaQ36637616
OsELF3 is involved in circadian clock regulation for promoting flowering under long-day conditions in riceQ84783551
LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon)Q84956525
A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.Q50444584
Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions.Q50514960
Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.Q50955984
Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.Q51579425
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.Q51599792
Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36.Q51987073
Adaptation of photoperiodic control pathways produces short-day flowering in rice.Q52106628
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.Q54227943
Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.Q54534353
Detection of quantitative trait loci controlling extremely early heading in riceQ80488705
Hd3a and RFT1 are essential for flowering in riceQ80556183
OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in riceQ81195005
Phylogenomic analysis of the PEBP gene family in cerealsQ81232310
Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice floweringQ83339725
Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic floweringQ83594468
Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in riceQ83931921
OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyBQ84086863
Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditionsQ84594479
Plant SET domain-containing proteins: structure, function and regulationQ36826687
RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in riceQ36861616
Adaptation of flowering-time by natural and artificial selection in Arabidopsis and riceQ36908187
Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated riceQ37110122
Control of the transition to flowering by chromatin modifications.Q37613984
Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1Q37644584
Histone methylation in higher plantsQ37700614
Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variationQ37791759
The coincidence of critical day length recognition for florigen gene expression and floral transition under long-day conditions in riceQ38082279
Florigen in rice: complex gene network for florigen transcription, florigen activation complex, and multiple functionsQ38085891
Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.Q38305146
OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.Q39416175
Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in riceQ42926940
DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneouslyQ43010445
The role of casein kinase II in flowering time regulation has diversified during evolutionQ43223346
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in riceQ43961077
Natural variation in Early flowering1 contributes to early flowering in japonica rice under long daysQ44169221
Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated riceQ44189278
Functional characterization of rice OsDof12.Q44233757
H3K36 methylation is involved in promoting rice floweringQ44365008
The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in riceQ44550307
LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.Q44594573
Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivationQ44685281
Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in riceQ45087496
Validation and characterization of Ghd7.1, a major quantitative trait locus with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.).Q47234190
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in riceQ47401391
Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in riceQ47602895
Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in riceQ48068549
Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1.Q48073077
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3aQ48076922
Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativaQ48077228
Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditionsQ48276034
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectregulation of gene expressionQ411391
complex networkQ665189
gene regulatory networkQ1502576
eukaryoteQ19088
plant structureQ20011319
genetic epigenesisQ64443099
regulation of plant gene expressionQ70575416
plant proteinsQ74708517
P304page(s)889-98
P577publication date2014-12-01
P1433published inProtein & CellQ26854012
P1476titleUnderstanding the genetic and epigenetic architecture in complex network of rice flowering pathways
P478volume5

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cites work (P2860)
Q50499242A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.
Q39625130A Drought-Inducible Transcription Factor Delays Reproductive Timing in Rice.
Q90134859Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations
Q39573763Current progress in orchid flowering/flower development research
Q50051801Divergent Hd1, Ghd7, and DTH7 Alleles Control Heading Date and Yield Potential of Japonica Rice in Northeast China.
Q28082477Epigenetic regulation of rice flowering and reproduction
Q47121270Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions
Q89507897Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1
Q92987721Improving Lodging Resistance: Using Wheat and Rice as Classical Examples
Q50592566MORF-RELATED GENE702, a Reader Protein of Trimethylated Histone H3 Lysine 4 and Histone H3 Lysine 36, Is Involved in Brassinosteroid-Regulated Growth and Flowering Time Control in Rice.
Q92704618Molecular Characterization and Expression Profile of PaCOL1, a CONSTANS-like Gene in Phalaenopsis Orchid
Q47860865Overexpression of OsMYB1R1-VP64 fusion protein increases grain yield in rice by delaying flowering time
Q92851079Rice homolog of Sin3-associated polypeptide 30, OsSFL1, mediates histone deacetylation to regulate flowering time during short days
Q47356528SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa).
Q52610467SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.
Q33665537Screening of Proximal and Interacting Proteins in Rice Protoplasts by Proximity-Dependent Biotinylation

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