Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications

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Optimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications is …
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scholarly articleQ13442814

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P819ADS bibcode2016PLoSO..1161719W
P356DOI10.1371/JOURNAL.PONE.0161719
P3181OpenCitations bibliographic resource ID3759468
P932PMC publication ID5008792
P698PubMed publication ID27583971

P2093author name stringJun He
Jeremy F Taylor
Jeremy Walker
Barry Simpson
Xiao-Lin Wu
George R Wiggans
Changsong Qian
Jiaqi Xu
Stewart Bauck
Jiansheng Qiu
Guofei Feng
P2860cites workRapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clusteringQ24655574
Development and characterization of a high density SNP genotyping assay for cattleQ27349568
Design of a bovine low-density SNP array optimized for imputationQ28730891
Linkage disequilibrium reveals different demographic history in egg laying chickensQ33746950
Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers.Q34243312
A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array.Q34318417
Development of a high density 600K SNP genotyping array for chickenQ34565503
Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar).Q35093832
Genomic selection using low-density marker panelsQ37173399
Single nucleotide polymorphism arrays: a decade of biological, computational and technological advancesQ37273694
Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression modelsQ37364405
The utility of low-density genotyping for imputation in the Thoroughbred horseQ37594612
Marker imputation with low-density marker panels in Dutch Holstein cattleQ39825305
Design of a low-density SNP chip for the main Australian sheep breeds and its effect on imputation and genomic prediction accuracyQ40549428
Coverage and efficiency in current SNP chips.Q42104486
Hot topic: performance of bovine high-density genotyping platforms in Holsteins and JerseysQ42626490
Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers.Q45264932
Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations.Q45345608
Use of the Illumina Bovine3K BeadChip in dairy genomic evaluation.Q51357487
Technical note: Characteristics and use of the Illumina BovineLD and GeneSeek Genomic Profiler low-density bead chips for genomic evaluation.Q51534836
P275copyright licenseCreative Commons CC0 LicenseQ6938433
P6216copyright statuscopyrighted, dedicated to the public domain by copyright holderQ88088423
P433issue9
P407language of work or nameEnglishQ1860
P304page(s)e0161719
P577publication date2016-01-01
P1433published inPLOS OneQ564954
P1476titleOptimal Design of Low-Density SNP Arrays for Genomic Prediction: Algorithm and Applications
P478volume11

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cites work (P2860)
Q48113892Comparing strategies for selection of low-density SNPs for imputation-mediated genomic prediction in U. S. Holsteins.
Q93050151Family-specific genotype arrays increase the accuracy of pedigree-based imputation at very low marker densities
Q92663483Genomic Predictions Using Low-Density SNP Markers, Pedigree and GWAS Information: A Case Study with the Non-Model Species Eucalyptus cladocalyx

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