| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bmcbi/TabeiKKA08 |
| P6179 | Dimensions Publication ID | 1023306749 |
| P356 | DOI | 10.1186/1471-2105-9-33 |
| P932 | PMC publication ID | 2375124 |
| P698 | PubMed publication ID | 18215258 |
| P5875 | ResearchGate publication ID | 5636990 |
| P2093 | author name string | Kiyoshi Asai | |
| Hisanori Kiryu | |||
| Taishin Kin | |||
| Yasuo Tabei | |||
| P2860 | cites work | Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering | Q21563506 |
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
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| A comprehensive comparison of comparative RNA structure prediction approaches | Q24561451 | ||
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| RSEARCH: finding homologs of single structured RNA sequences | Q24648763 | ||
| Pfold: RNA secondary structure prediction using stochastic context-free grammars | Q24671753 | ||
| 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing | Q24671878 | ||
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| Rfam: an RNA family database | Q24682045 | ||
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| T-Coffee: A novel method for fast and accurate multiple sequence alignment | Q27860999 | ||
| Secondary structure prediction for aligned RNA sequences | Q28206303 | ||
| Alignment of RNA base pairing probability matrices | Q28255564 | ||
| The equilibrium partition function and base pair binding probabilities for RNA secondary structure | Q28261689 | ||
| Murlet: a practical multiple alignment tool for structural RNA sequences | Q28299498 | ||
| Pairwise local structural alignment of RNA sequences with sequence similarity less than 40% | Q28303040 | ||
| Comparison of the predicted and observed secondary structure of T4 phage lysozyme | Q29398301 | ||
| MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons. | Q33217668 | ||
| Multiple structural alignment and clustering of RNA sequences | Q33275677 | ||
| Dynamic programming alignment accuracy | Q34475265 | ||
| CMfinder--a covariance model based RNA motif finding algorithm | Q34476878 | ||
| STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time | Q34513713 | ||
| SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments | Q34524672 | ||
| Mining frequent stem patterns from unaligned RNA sequences | Q34557172 | ||
| RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment | Q34632862 | ||
| SRPDB: Signal Recognition Particle Database | Q39790626 | ||
| DIALIGN: finding local similarities by multiple sequence alignment | Q48009356 | ||
| Rfold: an exact algorithm for computing local base pairing probabilities | Q48372156 | ||
| Robust prediction of consensus secondary structures using averaged base pairing probability matrices | Q48420017 | ||
| Pairwise RNA structure comparison with stochastic context-free grammars. | Q52043523 | ||
| A reliable sequence alignment method based on probabilities of residue correspondences. | Q52327452 | ||
| P433 | issue | 1 | |
| P921 | main subject | sequence alignment | Q827246 |
| P304 | page(s) | 33 | |
| P577 | publication date | 2008-01-23 | |
| P1433 | published in | BMC Bioinformatics | Q4835939 |
| P1476 | title | A fast structural multiple alignment method for long RNA sequences | |
| P478 | volume | 9 |
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| Q52698485 | Simultaneous alignment and folding of 28S rRNA sequences uncovers phylogenetic signal in structure variation. |
| Q36749387 | Software.ncrna.org: web servers for analyses of RNA sequences |
| Q42535764 | Specific alignment of structured RNA: stochastic grammars and sequence annealing |
| Q41007693 | Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families |
| Q47112684 | TurboFold II: RNA structural alignment and secondary structure prediction informed by multiple homologs |
| Q24608886 | TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences |
| Q55416853 | aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences. |
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