DNA Distortion and Specificity in a Sequence-Specific Endonuclease

scientific article

DNA Distortion and Specificity in a Sequence-Specific Endonuclease is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.JMB.2008.08.032
P8608Fatcat IDrelease_5uzqgwvdojhmnoazymv25zcivy
P932PMC publication ID2605692
P698PubMed publication ID18762194
P5875ResearchGate publication ID23228459

P2093author name stringAndrea C Babic
Elizabeth J Little
Nancy C Horton
Jurate Bitinaite
Veena M Manohar
P2860cites workStructure and function of type II restriction endonucleasesQ24555230
Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresisQ24633932
Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleasesQ24654223
Crystallography & NMR System: A New Software Suite for Macromolecular Structure DeterminationQ26778405
Structural and energetic origins of indirect readout in site-specific DNA cleavage by a restriction endonucleaseQ27617504
Direct and indirect readout in mutant Met repressor-operator complexesQ27627068
Crystal structures of SarA, a pleiotropic regulator of virulence genes in S. aureusQ27629827
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinkingQ27636405
Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalationQ27636803
Crystal structure of trp repressor/operator complex at atomic resolutionQ27728594
Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turnQ27734267
The interpretation of protein structures: Estimation of static accessibilityQ27860750
Integration of macromolecular diffraction dataQ27860752
XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron densityQ27861034
PHENIX: building new software for automated crystallographic structure determinationQ27861044
The CCP4 suite: programs for protein crystallographyQ27861090
Signals for TBP/TATA box recognitionQ33904857
Recognition of specific DNA sequences.Q34462035
Type II restriction endonucleases: structure and mechanismQ34555997
Catalytic mechanisms of restriction and homing endonucleasesQ35000885
Indirect readout of DNA sequence by proteins: the roles of DNA sequence-dependent intrinsic and extrinsic forcesQ36557529
Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics Simulations.Q38011250
Binding and recognition of GATATC target sequences by the EcoRV restriction endonuclease: a study using fluorescent oligonucleotides and fluorescence polarizationQ38301346
Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease.Q38323292
Site-directed mutagenesis studies with EcoRV restriction endonuclease to identify regions involved in recognition and catalysisQ38334428
The role of DNA structure and dynamics in the recognition of bovine papillomavirus E2 protein target sequencesQ38340702
Crystallization and preliminary diffraction analysis of the HincII restriction endonuclease-DNA complex.Q41697775
Electrostatic contributions to site specific DNA cleavage by EcoRV endonuclease.Q44114449
Structure of Aart, a designed six-finger zinc finger peptide, bound to DNA.Q44455590
Mechanistic insights from the structures of HincII bound to cognate DNA cleaved from addition of Mg2+ and Mn2+.Q45100700
Ca2+ binding in the active site of HincII: implications for the catalytic mechanismQ45112080
DNA cleavage by EcoRV endonuclease: two metal ions in three metal ion binding sites.Q46082878
Indirect readout of DNA sequence by papillomavirus E2 proteins depends upon net cation uptake.Q53602689
Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculationsQ58445773
A site-directed mutagenesis study to identify amino acid residues involved in the catalytic function of the restriction endonuclease EcoRVQ59648697
Direct versus indirect readout in the interaction of the trp repressor with non-canonical binding sitesQ60357518
EcoRV restriction endonuclease binds all DNA sequences with equal affinityQ67997671
Alteration of sequence specificity of the type II restriction endonuclease HincII through an indirect readout mechanismQ83288910
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)186-204
P577publication date2008-10-31
P1433published inJournal of Molecular BiologyQ925779
P1476titleDNA Distortion and Specificity in a Sequence-Specific Endonuclease
P478volume383

Reverse relations

cites work (P2860)
Q57793763Active site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases
Q27664636DNA intercalation without flipping in the specific ThaI-DNA complex
Q27653152Early Interrogation and Recognition of DNA Sequence by Indirect Readout
Q41827254Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity
Q35603962Probing the run-on oligomer of activated SgrAI bound to DNA.
Q27678459Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease

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