| scholarly article | Q13442814 |
| P50 | author | Vikas Nanda | Q41050119 |
| P2093 | author name string | Lei Zhang | |
| Ronald L Koder | |||
| Srinivas Annavarapu | |||
| Agustina Rodriguez-Granillo | |||
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| Recognition of spatial motifs in protein structures | Q30432556 | ||
| Fluorinated Coiled-Coil Proteins Prepared In Vivo Display Enhanced Thermal and Chemical Stability | Q30665183 | ||
| Trp-cage: Folding free energy landscape in explicit water | Q30882903 | ||
| The helical s constant for alanine in water derived from template-nucleated helices | Q31162195 | ||
| Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros | Q33185015 | ||
| Mirrors in the PDB: left-handed alpha-turns guide design with D-amino acids | Q33505834 | ||
| Phylogeny of protein-folding trajectories reveals a unique pathway to native structure | Q33580753 | ||
| Crystal structure of a hydrophobic 19-residue peptide helix containing three centrally located d amino acids | Q33713973 | ||
| Hydration of the peptide backbone largely defines the thermodynamic propensity scale of residues at the C' position of the C-capping box of alpha-helices | Q33943720 | ||
| A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi,psi values in successive residues gives rise to anion-binding sites that occur commonly and are found often at functionally important regions | Q33956731 | ||
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| Stereochemical punctuation marks in protein structures: glycine and proline containing helix stop signals 1 1Edited by J. Thornton | Q34457982 | ||
| Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins | Q35146195 | ||
| Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein. | Q36501036 | ||
| Conformationally restricted bicyclic analogs of somatostatin | Q37587954 | ||
| Glycine as a D-amino acid surrogate in the K(+)-selectivity filter | Q37704835 | ||
| The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations | Q39124220 | ||
| Thermodynamics of the Trp-cage miniprotein unfolding in urea | Q40002852 | ||
| A small peptide stereochemically customized as a globular fold with a molecular cleft | Q40443983 | ||
| Capping and alpha-helix stability | Q41330687 | ||
| Highly active cyclic and bicyclic somatostatin analogues of reduced ring size | Q41700642 | ||
| The helical alanine controversy: an (Ala)6 insertion dramatically increases helicity | Q41863409 | ||
| Hydrophobic core malleability of a de novo designed three-helix bundle protein | Q43513136 | ||
| Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine | Q43547613 | ||
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| D-amino acid residues in peptides and proteins. | Q44309134 | ||
| Ab initio folding simulation of the Trp-cage mini-protein approaches NMR resolution | Q44360114 | ||
| Possible locally driven folding pathways of TC5b, a 20-residue protein | Q44496112 | ||
| A highly stable short alpha-helix constrained by a main-chain hydrogen-bond surrogate | Q45082554 | ||
| Exploiting the right side of the Ramachandran plot: substitution of glycines by D-alanine can significantly increase protein stability | Q45102646 | ||
| Stereospecific peptide folds. A rationally designed molecular bracelet | Q45130422 | ||
| Modular design of synthetic protein mimics. Characterization of the helical conformation of a 13-residue peptide in crystals | Q45451798 | ||
| Folding simulations of Trp-cage mini protein in explicit solvent using biasing potential replica-exchange molecular dynamics simulations | Q46144488 | ||
| Hyperstable miniproteins: additive effects of D- and L-Ala mutations | Q46249928 | ||
| Dissecting the energetics of protein alpha-helix C-cap termination through chemical protein synthesis | Q46919334 | ||
| Amino acid propensities are position-dependent throughout the length of alpha-helices | Q47873966 | ||
| Normal mode analysis using the driven molecular dynamics method. II. An application to biological macromolecules | Q51635683 | ||
| Simulated Evolution of Emergent Chiral Structures in Polyalanine | Q57837611 | ||
| Differential helix propensity of small apolar side chains studied by molecular dynamics simulations | Q68165527 | ||
| Accommodation of a D-Phe residue into a right-handed 3(10)-helix: structure of Boc-D-Phe-(Aib)4-Gly-L-Leu-(Aib)2-OMe, an analogue of the amino terminal segment of antiamoebins and emerimicins | Q70631674 | ||
| Ambidextrous molecules: cylindrical peptide structures formed by fusing left- and right-handed helices | Q71394878 | ||
| Side-chain conformational entropy in protein unfolded states | Q73912102 | ||
| Unfolding thermodynamics of Trp-cage, a 20 residue miniprotein, studied by differential scanning calorimetry and circular dichroism spectroscopy | Q79762735 | ||
| Analysis and design of turns in alpha-helical hairpins | Q81405920 | ||
| Ultrafast folding of a computationally designed Trp-cage mutant: Trp2-cage | Q82631493 | ||
| P433 | issue | 46 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | catalysis | Q82264 |
| computational design | Q106195621 | ||
| P304 | page(s) | 18750-9 | |
| P577 | publication date | 2011-11-23 | |
| P1433 | published in | Journal of the American Chemical Society | Q898902 |
| P1476 | title | Computational Design of Thermostabilizing d -Amino Acid Substitutions | |
| P478 | volume | 133 |
| Q50941255 | A computational strategy for altering an enzyme in its cofactor preference to NAD(H) and/or NADP(H). |
| Q27728065 | Accurate de novo design of hyperstable constrained peptides |
| Q90662570 | Adevonin, a novel synthetic antimicrobial peptide designed from the Adenanthera pavonina trypsin inhibitor (ApTI) sequence |
| Q27681135 | Circular permutation of the Trp-cage: fold rescue upon addition of a hydrophobic staple |
| Q38955708 | D-amino acids modulate the cellular response of enzymatic-instructed supramolecular nanofibers of small peptides |
| Q35747679 | Discovering functional, non-proteinogenic amino acid containing, peptides using genetic code reprogramming |
| Q41200219 | Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides |
| Q39116654 | Experimental and Computational Analysis of Protein Stabilization by Gly-to-d-Ala Substitution: A Convolution of Native State and Unfolded State Effects |
| Q46293786 | Fast and Effective Ion Mobility-Mass Spectrometry Separation of d-Amino-Acid-Containing Peptides |
| Q27684851 | Folding thermodynamics of protein-like oligomers with heterogeneous backbones |
| Q38940777 | Insights from molecular dynamics simulations for computational protein design |
| Q89542344 | Molecular dynamics-derived rotamer libraries for d-amino acids within homochiral and heterochiral polypeptides |
| Q48255419 | N-terminal diproline and charge group effects on the stabilization of helical conformation in alanine-based short peptides: CD studies with water and methanol as solvent |
| Q37351363 | Using D-Amino Acids to Delineate the Mechanism of Protein Folding: Application to Trp-cage |
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