Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough.

scientific article

Evidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1261/RNA.7120504
P3181OpenCitations bibliographic resource ID2056082
P932PMC publication ID1236997
P698PubMed publication ID15388879
P5875ResearchGate publication ID8326105

P50authorJonathan D. DinmanQ42179748
P2093author name stringJason W Harger
P2860cites workA newly identified N-terminal amino acid sequence of human eIF4G binds poly(A)-binding protein and functions in poly(A)-dependent translationQ22008560
Interaction between Ski7p and Upf1p is required for nonsense-mediated 3'-to-5' mRNA decay in yeastQ24310826
The surveillance complex interacts with the translation release factors to enhance termination and degrade aberrant mRNAsQ24324097
Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexesQ24551045
The suil suppressor locus in Saccharomyces cerevisiae encodes a translation factor that functions during tRNA(iMet) recognition of the start codonQ24630664
Transformation of intact yeast cells treated with alkali cationsQ24672708
Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processingQ27930125
Identification and characterization of mutations in the UPF1 gene that affect nonsense suppression and the formation of the Upf protein complex but not mRNA turnoverQ27931028
The yeast poly(A)-binding protein Pab1p stimulates in vitro poly(A)-dependent and cap-dependent translation by distinct mechanismsQ27931890
Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screenQ27933721
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradationQ27936597
The DCP2 protein is required for mRNA decapping in Saccharomyces cerevisiae and contains a functional MutT motifQ27936654
Upf1p control of nonsense mRNA translation is regulated by Nmd2p and Upf3pQ27937406
The Mof2/Sui1 protein is a general monitor of translational accuracyQ27937473
Ribosomal frameshifting in yeast viruses.Q40971997
Prions and RNA viruses of Saccharomyces cerevisiaeQ41291206
The case for the involvement of the Upf3p in programmed -1 ribosomal frameshiftingQ41816780
Frameshift suppression Saccharomyces cerevisiae. II. Genetic properties of group II suppressors.Q42070634
An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA.Q42176140
ATP is a cofactor of the Upf1 protein that modulates its translation termination and RNA binding activitiesQ42284161
The case against the involvement of the NMD proteins in programmed frameshiftingQ43206699
An ‘integrated model’ of programmed ribosomal frameshiftingQ64410761
Identification and characterization of genes that are required for the accelerated degradation of mRNAs containing a premature translational termination codonQ72613072
The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decayQ73958589
The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading framesQ27938420
Genetic and biochemical characterization of mutations in the ATPase and helicase regions of the Upf1 proteinQ27940268
A perfect message: RNA surveillance and nonsense-mediated decayQ29616125
The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translational termination codonQ29618647
Premature translational termination triggers mRNA decappingQ29620198
Association of the yeast poly(A) tail binding protein with translation initiation factor eIF-4GQ29620263
A subcomplex of three eIF3 subunits binds eIF1 and eIF5 and stimulates ribosome binding of mRNA and tRNA(i)MetQ33285663
mRNA surveillance in eukaryotes: kinetic proofreading of proper translation termination as assessed by mRNP domain organization?Q33665734
Identification of an additional gene required for eukaryotic nonsense mRNA turnoverQ33837730
Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA.Q33888137
Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptomeQ33959686
Translational maintenance of frame: mutants of Saccharomyces cerevisiae with altered -1 ribosomal frameshifting efficienciesQ33962265
The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selectionQ33962536
Two chromosomal genes required for killing expression in killer strains of Saccharomyces cerevisiaeQ33991132
An in vivo dual-luciferase assay system for studying translational recoding in the yeast Saccharomyces cerevisiae.Q34049438
Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiaeQ34092913
Quality control of mRNA functionQ34156109
Mutations in the MOF2/SUI1 gene affect both translation and nonsense-mediated mRNA decay.Q34361915
Nonsense-mediated decay mutants do not affect programmed -1 frameshiftingQ34362790
Nonsense-mediated mRNA decay in Saccharomyces cerevisiaeQ34417077
Curbing the nonsense: the activation and regulation of mRNA surveillanceQ34426879
The role of Upf proteins in modulating the translation read-through of nonsense-containing transcriptsQ34582806
mRNA surveillance: the perfect persistQ34739257
Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codonsQ34752126
Yeast ochre suppressor SUQ5-ol is an altered tRNA Ser UCA.Q35739421
Mof4-1 is an allele of the UPF1/IFS2 gene which affects both mRNA turnover and -1 ribosomal frameshifting efficiencyQ35911278
The upf3 protein is a component of the surveillance complex that monitors both translation and mRNA turnover and affects viral propagation.Q36215365
Decoying the cap- mRNA degradation system by a double-stranded RNA virus and poly(A)- mRNA surveillance by a yeast antiviral systemQ36551077
Ribosomal frameshifting efficiency and gag/gag-pol ratio are critical for yeast M1 double-stranded RNA virus propagationQ36698153
Genetic selection for mutations that reduce or abolish ribosomal recognition of the HIS4 translational initiator regionQ36792263
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeastQ38346636
The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.Q38531566
A dual-luciferase reporter system for studying recoding signalsQ38551490
Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decappingQ38614772
Gene products that promote mRNA turnover in Saccharomyces cerevisiaeQ40654686
P4510describes a project that usesImageQuantQ112270642
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)1721-1729
P577publication date2004-09-23
P1433published inRNAQ7277164
P1476titleEvidence against a direct role for the Upf proteins in frameshifting or nonsense codon readthrough
P478volume10

Reverse relations

cites work (P2860)
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Q90701393Decoding the Function of Expansion Segments in Ribosomes
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Q24311680Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways
Q34807889Mutations of highly conserved bases in the peptidyltransferase center induce compensatory rearrangements in yeast ribosomes
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Q34764810Unexpected roles for UPF1 in HIV-1 RNA metabolism and translation
Q33700148Yeast strains with N-terminally truncated ribosomal protein S5: implications for the evolution, structure and function of the Rps5/Rps7 proteins
Q42030447rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance.

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