Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists

scientific article

Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.3389/FMICB.2016.01359
P3181OpenCitations bibliographic resource ID3815466
P932PMC publication ID5003876
P698PubMed publication ID27625644

P50authorYogesh S ShoucheQ88916174
Om PrakashQ97518303
Praveen RahiQ56396149
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Fungal pigments inhibit the matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis of darkly pigmented fungiQ23909792
MALDI-TOF mass spectrometry is a fast and reliable platform for identification and ecological studies of species from family RhizobiaceaeQ28478373
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Identification of rare pathogenic bacteria in a clinical microbiology laboratory: impact of matrix-assisted laser desorption ionization-time of flight mass spectrometryQ29616596
Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiologyQ33810778
Identification of Campylobacter species and related organisms by matrix assisted laser desorption ionization-time of flight (MALDI-TOF) mass spectrometryQ33837358
The identification of anaerobic bacteria using MALDI-TOF MS.Q33880499
Comparison of direct colony method versus extraction method for identification of gram-positive cocci by use of Bruker Biotyper matrix-assisted laser desorption ionization-time of flight mass spectrometryQ33912376
Proteomics for routine identification of microorganismsQ33949796
Matrix-assisted laser desorption ionization (MALDI)-time of flight mass spectrometry- and MALDI biotyper-based identification of cultured biphenyl-metabolizing bacteria from contaminated horseradish rhizosphere soilQ33984597
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the identification of bacteria and yeasts in a clinical microbiological laboratory: a reviewQ34027567
Applications of MALDI-TOF mass spectrometry in clinical diagnostic microbiologyQ34076539
MALDI-TOF MS in microbiological diagnostics-identification of microorganisms and beyond (mini review).Q34111978
Isolating "uncultivable" microorganisms in pure culture in a simulated natural environmentQ34127944
Species identification of clinical Prevotella isolates by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ34149243
Comparison of the Microflex LT and Vitek MS systems for routine identification of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ34155689
Robustness of two MALDI-TOF mass spectrometry systems for bacterial identificationQ34198706
Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting gram-negative bacilli isolated from cultures from cystic fibrosis patientsQ34229243
Growing unculturable bacteriaQ34290686
What is new in clinical microbiology-microbial identification by MALDI-TOF mass spectrometry: a paper from the 2011 William Beaumont Hospital Symposium on molecular pathologyQ34337477
MALDIquant: a versatile R package for the analysis of mass spectrometry dataQ34337857
MALDI-TOF MS analysis of human and animal Brachyspira species and benefits of database extensionQ34433770
Large scale MALDI-TOF MS based taxa identification to identify novel pigment producers in a marine bacterial culture collectionQ34468573
Characterisation and profiling of Bacillus subtilis, Bacillus cereus and Bacillus licheniformis by MALDI-TOF mass fingerprintingQ34497138
Development of a clinically comprehensive database and a simple procedure for identification of molds from solid media by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ34523418
Comparison between the Biflex III-Biotyper and the Axima-SARAMIS systems for yeast identification by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ34579816
Characterization of the cultivable microbial community in a spinach-processing plant using MALDI-TOF MS.Q34642279
Rapid identification of bacterial isolates from wheat roots by high resolution whole cell MALDI-TOF MS analysisQ34671171
Matrix-assisted laser desorption ionization-time of flight mass spectrometry in clinical microbiologyQ34675879
Multicenter evaluation of the Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry system for identification of Gram-positive aerobic bacteria.Q34711709
Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratoryQ34896345
Novel approach for differentiating Shigella species and Escherichia coli by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ34975940
Modern clinical microbiology: new challenges and solutionsQ34982856
MALDI-TOF mass spectrometry as a tool for differentiation of Bradyrhizobium species: application to the identification of Lupinus nodulating strains.Q35028237
Performance of two MALDI-TOF MS systems for the identification of yeasts isolated from bloodstream infections and cerebrospinal fluids using a time-saving direct transfer protocol.Q35059849
Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrumQ35085770
Identification of Borrelia species after creation of an in-house MALDI-TOF MS databaseQ35095607
Development and validation of an in-house database for matrix-assisted laser desorption ionization-time of flight mass spectrometry-based yeast identification using a fast protein extraction procedureQ35098515
Microbial culturomics: paradigm shift in the human gut microbiome studyQ29616597
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometryQ29616600
Multilocus sequence typing, pulsed-field gel electrophoresis, and fla short variable region typing of clonal complexes of Campylobacter jejuni strains of human, bovine, and poultry origins in LuxembourgQ30485158
SpectraBank: an open access tool for rapid microbial identification by MALDI-TOF MS fingerprintingQ30485598
Characterization of the protein subset desorbed by MALDI from whole bacterial cellsQ30658522
MALDI-TOF identification of the human Gut microbiome in people with and without diarrhea in SenegalQ30812126
Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibioticsQ30838720
Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov.Q30856511
VibrioBase: A MALDI-TOF MS database for fast identification of Vibrio spp. that are potentially pathogenic in humansQ30873931
Enterobacillus tribolii gen. nov., sp. nov., a novel member of the family Enterobacteriaceae, isolated from the gut of a red flour beetle, Tribolium castaneum.Q30900178
Diversity of extremely halophilic cultivable prokaryotes in Mediterranean, Atlantic and Pacific solar salterns: Evidence that unexplored sites constitute sources of cultivable novelty.Q30907517
Species-specific identification and differentiation of Arcobacter, Helicobacter and Campylobacter by full-spectral matrix-associated laser desorption/ionization time of flight mass spectrometry analysisQ30952616
Evaluation of MALDI-TOF MS as a tool for high-throughput dereplicationQ31020737
Characterization of intact microorganisms by MALDI mass spectrometryQ31037846
A dual approach employing MALDI-TOF MS and real-time PCR for fast species identification within the Enterobacter cloacae complexQ31043119
Evaluation of a simple protein extraction method for species identification of clinically relevant staphylococci by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ31095606
MALDI TOF MS profiling of bacteria at the strain level: a reviewQ31097177
Rapid screening and dereplication of bacterial isolates from marine sponges of the sula ridge by intact-cell-MALDI-TOF mass spectrometry (ICM-MS).Q31136582
Identification of archaea and some extremophilic bacteria using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometryQ33200156
Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometryQ33210695
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganismsQ33233232
Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matchingQ33248836
Universal sample preparation method for characterization of bacteria by matrix-assisted laser desorption ionization-time of flight mass spectrometryQ33271910
Classification and identification of bacteria by mass spectrometry and computational analysisQ33355970
Phylogenetic classification and identification of bacteria by mass spectrometryQ33434373
High-throughput identification of bacteria and yeast by matrix-assisted laser desorption ionization-time of flight mass spectrometry in conventional medical microbiology laboratoriesQ33522362
Comparison of two matrix-assisted laser desorption ionization-time of flight mass spectrometry methods with conventional phenotypic identification for routine identification of bacteria to the species levelQ33531989
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Identification of Clinically Important Yeast SpeciesQ33644147
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for Identification of Nocardia SpeciesQ33699646
Comparison of MALDI TOF with conventional identification of clinically relevant bacteriaQ33711328
Leptospira species and serovars identified by MALDI-TOF mass spectrometry after database implementationQ33720811
Application and use of various mass spectrometry methods in clinical microbiologyQ33726075
Matrix-assisted laser desorption ionization-time of flight mass spectrometry as an alternative to 16S rRNA gene sequencing for identification of difficult-to-identify bacterial strainsQ33755711
Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments.Q33795490
Wine yeast typing by MALDI-TOF MS.Q35116775
Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus MethanobacteriumQ35123337
Species differentiation within the Staphylococcus intermedius group using a refined MALDI-TOF MS database.Q35164952
Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).Q35176289
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry for rapid identification of Brachyspira species isolated from swine, including the newly described "Brachyspira hampsonii".Q35204842
Optimization of matrix assisted desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS) for the characterization of Bacillus and Brevibacillus speciesQ35217875
MALDI-TOF mass spectrometry for rapid identification of clinical fungal isolates based on ribosomal protein biomarkersQ35534114
Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry for species identification of nonfermenting Gram-negative bacilliQ35576038
Biomarker- and similarity coefficient-based approaches to bacterial mixture characterization using matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS).Q35832633
Rapid identification of haloarchaea and methanoarchaea using the matrix assisted laser desorption/ionization time-of-flight mass spectrometry.Q36254733
Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylumQ37490253
Strategies for culture of 'unculturable' bacteriaQ37757054
Use of MALDI-TOF mass spectrometry for identification of bacteria that are difficult to cultureQ38060024
Increasing Metagenomic Resolution of Microbiome Interactions Through Functional Phylogenomics and Bacterial Sub-CommunitiesQ38334533
LPSN--list of prokaryotic names with standing in nomenclatureQ38492580
Reclassification of Angiococcus disciformis, Cystobacter minus and Cystobacter violaceus as Archangium disciforme comb. nov., Archangium minus comb. nov. and Archangium violaceum comb. nov., unification of the families Archangiaceae and CystobacteraQ41045291
High Diversity of Culturable Prokaryotes in a Lithifying Hypersaline Microbial MatQ58028578
Culturomics: a new approach to study the human microbiomeQ58295188
MALDI-TOF MS: A return to phenotyping in microbial identification?Q58797055
P407language of work or nameEnglishQ1860
P921main subjectmatrix-assisted laser desorption/ionizationQ736400
P304page(s)1359
P577publication date2016-08-30
P1433published inFrontiers in MicrobiologyQ27723481
P1476titleMatrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass-Spectrometry (MALDI-TOF MS) Based Microbial Identifications: Challenges and Scopes for Microbial Ecologists
P478volume7

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