Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together?

scientific article (publication date: 2002)

Chromatin remodeling, histone modifications, and DNA methylation-how does it all fit together? is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1002/JCB.10286
P3181OpenCitations bibliographic resource ID534272
P698PubMed publication ID12244565

P2093author name stringKeith D Robertson
Theresa M Geiman
P2860cites workIn vivo activity of murine de novo methyltransferases, Dnmt3a and Dnmt3bQ39449285
A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI.Q39530698
Preferential methylation of unmethylated DNA by Mammalian de novo DNA methyltransferase Dnmt3a.Q40753457
A histone H3 methyltransferase controls DNA methylation in Neurospora crassaQ42664087
Dnmt3a and Dnmt3b are transcriptional repressors that exhibit unique localization properties to heterochromatinQ42827600
An SNF2 factor involved in mammalian development and cellular proliferationQ42828901
Maintenance of genomic methylation requires a SWI2/SNF2-like proteinQ47964889
A novel putative helicase produced in early murine lymphocytes.Q48065630
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian developmentQ22010765
Mutations in ATRX, encoding a SWI/SNF-like protein, cause diverse changes in the pattern of DNA methylationQ22253401
Regulation of chromatin structure by site-specific histone H3 methyltransferasesQ24290115
The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndromeQ24647294
Methylation of histone H3 lysine 9 creates a binding site for HP1 proteinsQ27860456
Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domainQ27860477
Targeted mutation of the DNA methyltransferase gene results in embryonic lethalityQ28131773
Epigenetic reprogramming in mammalian developmentQ28212171
Physical and functional association of SU(VAR)3-9 and HDAC1 in DrosophilaQ28360331
Lsh, a member of the SNF2 family, is required for genome-wide methylationQ28364248
Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferasesQ28507226
Lsh, an SNF2/helicase family member, is required for proliferation of mature T lymphocytesQ28591426
Lsh, a SNF2 family member, is required for normal murine developmentQ28591969
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assemblyQ29614718
A targeting sequence directs DNA methyltransferase to sites of DNA replication in mammalian nucleiQ29616800
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferaseQ29617298
The DNA methyltransferases of mammalsQ29617317
ATP-dependent chromatin-remodeling complexes.Q33786898
Enzymatic properties of de novo-type mouse DNA (cytosine-5) methyltransferasesQ33941798
Mobilization of transposons by a mutation abolishing full DNA methylation in ArabidopsisQ33946286
Purification and functional characterization of a histone H3-lysine 4-specific methyltransferase.Q34108153
ATP-dependent chromatin remodeling activities.Q34298921
The many faces of histone lysine methylationQ34688382
DNA methyltransferase 3B mutations linked to the ICF syndrome cause dysregulation of lymphogenesis genesQ38294012
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectDNA methylationQ874745
P304page(s)117-25
P577publication date2002-01-01
P1433published inJournal of Cellular BiochemistryQ6294917
P1476titleChromatin remodeling, histone modifications, and DNA methylation-how does it all fit together?
P478volume87

Reverse relations

cites work (P2860)
Q47264910A Summary of the Biological Processes, Disease-Associated Changes, and Clinical Applications of DNA Methylation
Q24537436A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
Q33812527A higher degree of expression of DNA methyl transferase 1 in cervical cancer is associated with poor survival outcome.
Q41317440Aberrant DNA methylation of ESR1 and p14ARF genes could be useful as prognostic indicators in osteosarcoma
Q33597867Aberrant KLK4 gene promoter hypomethylation in pediatric hepatoblastomas
Q92715155Aberrant RASSF5 gene transcribed region hypermethylation in pediatric hepatoblastomas
Q49185675Abnormal DNA methylation may contribute to the progression of osteosarcoma
Q34570422Accessibility control of V(D)J recombination
Q57178751Advances and Limitations of Current Epigenetic Studies Investigating Mammalian Axonal Regeneration
Q47164170An integrative analysis of DNA methylation in osteosarcoma
Q35595410Apoptotic pathways activated by histone deacetylase inhibitors: implications for the drug-resistant phenotype
Q36164751Causes and consequences of DNA hypomethylation in human cancer
Q40408467Cell adhesion status-dependent histone acetylation is regulated through intracellular contractility-related signaling activities
Q38332505Changes in epigenetic regulation of CD4+ T lymphocytesin biliary atresia
Q36454346ChromDB: the chromatin database
Q36406546Chromatin physics: Replacing multiple, representation-centered descriptions at discrete scales by a continuous, function-dependent self-scaled model
Q91140229Chromosome territories and the global regulation of the genome
Q82669588Comparison of genetic and cytogenetic maps of hexaploid wheat (Triticum aestivum L.) using SSR and DArT markers
Q34631742Conserved and divergent patterns of DNA methylation in higher vertebrates
Q36436577Cross-species clues of an epigenetic imprinting regulatory code for the IGF2R gene
Q37405424Cutaneous mosaicism: a molecular and clinical review
Q55425717DNA methylation and repressive H3K9 and H3K27 trimethylation in the promoter regions of PD-1, CTLA-4, TIM-3, LAG-3, TIGIT, and PD-L1 genes in human primary breast cancer.
Q35873699DNA methylation biomarkers of cancer: moving toward clinical application
Q97069893DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea
Q37618053DNA methylation: an introduction to the biology and the disease-associated changes of a promising biomarker.
Q28584099DNA methyltransferase 3b regulates nerve growth factor-induced differentiation of PC12 cells by recruiting histone deacetylase 2
Q89136390DNMT1 modulates interneuron morphology by regulating Pak6 expression through crosstalk with histone modifications
Q91763706DNMT1 recruited by EZH2-mediated silencing of miR-484 contributes to the malignancy of cervical cancer cells through MMP14 and HNF1A
Q39345879DNMT1: an emerging target in the treatment of invasive urinary bladder cancer
Q33614979Developmental epigenetics of the murine secondary palate
Q35814986Discovering endophenotypes for major depression
Q51053019Effects of trichostatin A on histone acetylation and methylation characteristics in early porcine embryos after somatic cell nuclear transfer.
Q80282660Endosperm-specific hypomethylation, and meiotic inheritance and variation of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) inter-strain hybrids
Q24643547Environmental studies of schizophrenia through the prism of epigenetics
Q46774297Epigenetic Changes are Associated with Programmed Cell Death Induced by Heat Stress in Seedling Leaves of Zea mays.
Q34073304Epigenetic Upregulation of Urokinase Plasminogen Activator Promotes the Tropism of Mesenchymal Stem Cells for Tumor Cells
Q36086535Epigenetic changes in cancer by Raman imaging, fluorescence imaging, AFM and scanning near-field optical microscopy (SNOM). Acetylation in normal and human cancer breast cells MCF10A, MCF7 and MDA-MB-231.
Q47730306Epigenetic changes in the early stage of silica-induced cell transformation.
Q47551113Epigenetic control of influenza virus: role of H3K79 methylation in interferon-induced antiviral response.
Q36975838Epigenetic control of plant stress response
Q35649230Epigenetic inheritance of fetal genes in allergic asthma.
Q40446676Epigenetic mechanism of rRNA gene silencing: temporal order of NoRC-mediated histone modification, chromatin remodeling, and DNA methylation
Q37976256Epigenetic regulation in RCC: opportunities for therapeutic intervention?
Q44965351Epigenetic regulation of human telomerase reverse transcriptase promoter activity during cellular differentiation
Q40229398Epigenetic regulation of integrin-linked kinase expression depending on adhesion of gastric carcinoma cells
Q24812104Epigenetics of cervical cancer. An overview and therapeutic perspectives
Q34746459Epigenetics of personality traits: an illustrative study of identical twins discordant for risk-taking behavior
Q26745950Epigenetics: A key paradigm in reproductive health
Q47102688Epigenomic Hard Drive Imprinting: A Hidden Code Beyond the Biological Death of Cancer Patients
Q90576232Epigenomic signatures underpin the axonal regenerative ability of dorsal root ganglia sensory neurons
Q38097316Etiology of biliary atresia as a developmental anomaly: recent advances
Q79769053Extent and pattern of DNA methylation alteration in rice lines derived from introgressive hybridization of rice and Zizania latifolia Griseb
Q39821204Gene expression pattern and downregulation of DNA methyltransferase 1 using siRNA in porcine somatic cells
Q36730925Gene-environment interactions and epigenetic basis of human diseases
Q36064545Genome evolution of allopolyploids: a process of cytological and genetic diploidization.
Q34146435Genome-wide DNA methylation analysis in cohesin mutant human cell lines
Q48015796Genome-wide DNA methylation patterns in coronary heart disease
Q37108153Genome-wide analysis of DNA methylation in hepatoblastoma tissues
Q38469915Histone H4 deacetylation down-regulates catalase gene expression in doxorubicin-resistant AML subline
Q40509434Histone H4 hyperacetylation precludes histone H4 lysine 20 trimethylation.
Q39957667Histone deacetylase inhibitor-induced cellular apoptosis involves stanniocalcin-1 activation.
Q37400043Histone modification of embryonic stem cells produced by somatic cell nuclear transfer and fertilized blastocysts
Q43251030Hydralazine target: from blood vessels to the epigenome
Q34181789Identification of Driver and Passenger DNA Methylation in Cancer by Epigenomic Analysis
Q28580458Identification of T-cadherin as a novel target of DNA methyltransferase 3B and its role in the suppression of nerve growth factor-mediated neurite outgrowth in PC12 cells
Q36302249Inhibition of histone deacetylase activity promotes invasion of human cancer cells through activation of urokinase plasminogen activator
Q26864563Interconnection between flowering time control and activation of systemic acquired resistance
Q89394173Intracytoplasmic sperm injection for male infertility and consequences for offspring
Q41830422L1 retrotransposons in human cancers
Q37609036Loss of methylation in CpG sites in the NF-κB enhancer elements of inducible nitric oxide synthase is responsible for gene induction in human articular chondrocytes.
Q91741570MASQC: Next Generation Sequencing Assists Third Generation Sequencing for Quality Control in N6-Methyladenine DNA Identification
Q24810367MSRE-PCR for analysis of gene-specific DNA methylation
Q36408244Mandatory fortification with folic acid in the United States is associated with increased expression of DNA methyltransferase-1 in the cervix
Q36164763Many players, one goal: how chromatin states are inherited during cell division
Q34812382Mapping Post-translational Modifications of Histones H2A, H2B and H4 in Schizosaccharomyces pombe
Q33568976Mapping of lysine methylation and acetylation in core histones of Neurospora crassa
Q47358419MeCP2 expression in human cerebral cortex and lymphoid cells: immunochemical characterization of a novel higher-molecular-weight form.
Q47323579Methylation profiling of twenty four genes and the concordant methylation behaviours of nineteen genes that may contribute to hepatocellular carcinogenesis
Q35857389No Evidence for a Parent-of-Origin Specific Differentially Methylated Region Linked to RASGRF1.
Q35802810Nuclear receptor recruitment of histone-modifying enzymes to target gene promoters
Q34369230Nuclear respiratory factor 1 mediates the transcription initiation of insulin-degrading enzyme in a TATA box-binding protein-independent manner
Q53631922Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding.
Q36772839Nutrigenomics: concepts and applications to pharmacogenomics and clinical medicine
Q64078658On the Complexity of Mechanisms and Consequences of Chromothripsis: An Update
Q24794534Osteo-Promoter Database (OPD) -- promoter analysis in skeletal cells
Q35111595Palate morphogenesis: current understanding and future directions
Q47391321Paramutation: the chromatin connection.
Q37730440Pharmaco-epigenomics: discovering therapeutic approaches and biomarkers for cancer therapy
Q42737853Profiling genome-wide chromatin methylation with engineered posttranslation apparatus within living cells
Q57019111Protective effects of leptin during the suckling period against later obesity may be associated with changes in promoter methylation of the hypothalamic pro-opiomelanocortin gene
Q39142194PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments
Q33411313RTA promoter demethylation and histone acetylation regulation of murine gammaherpesvirus 68 reactivation
Q37603881Rapid genomic changes in polyploid wheat and related species: implications for genome evolution and genetic improvement
Q38245985Recent Advances in Etiology of Biliary Atresia
Q33428537Regulation of p110delta PI 3-kinase gene expression
Q27663977Reversible Post-Translational Carboxylation Modulates the Enzymatic Activity of N -Acetyl- l -ornithine Transcarbamylase
Q36459959Role of DNA methyltransferases in regulation of human ribosomal RNA gene transcription
Q46947246Role of histone acetylation in reprogramming of somatic nuclei following nuclear transfer
Q34131621Role of histone deacetylation in cell-specific expression of endothelial nitric-oxide synthase
Q35742289Scriptaid Treatment Decreases DNA Methyltransferase 1 Expression by Induction of MicroRNA-152 Expression in Porcine Somatic Cell Nuclear Transfer Embryos
Q44429713Splicing factor 3B1 hypomethylation is associated with altered SF3B1 transcript expression in older humans
Q37446299TIMP3 and CCNA1 hypermethylation in HNSCC is associated with an increased incidence of second primary tumors
Q38114062Targeted therapies in the treatment of advanced hepatocellular carcinoma
Q37906713Telomere dynamics: the influence of folate and DNA methylation
Q59130095The Interplay Between Immune Response and Bacterial Infection in COPD: Focus Upon Non-typeable
Q35808823The MTG proteins: chromatin repression players with a passion for networking
Q59136351The Role of Promoter-Associated Histone Acetylation of () and () Genes in Heat-Induced Lateral Root Primordium Inhibition in Maize
Q35667471The SWI/SNF complex--chromatin and cancer.
Q46142686The developmental potential of mouse somatic cell nuclear-transferred oocytes treated with trichostatin A and 5-aza-2'-deoxycytidine
Q37063441The epigenetics of mantle cell lymphoma
Q37726170The histone methyltransferase ESET is required for the survival of spermatogonial stem/progenitor cells in mice
Q36001865The transposon-driven evolutionary origin and basis of histone deacetylase functions and limitations in disease prevention
Q28180053Transcriptional silencing of the DLC-1 tumor suppressor gene by epigenetic mechanism in gastric cancer cells
Q40138806Transcriptional silencing of the TMS1/ASC tumour suppressor gene by an epigenetic mechanism in hepatocellular carcinoma cells
Q51900031Trichostatin A Promotes the Development of Bovine Somatic Cell Nuclear Transfer Embryos
Q36341121Ultrastructural localization of 5-methylcytosine on DNA and RNA.

Search more.