Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA

scientific article

Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.JMB.2011.02.014
P8608Fatcat IDrelease_zw466ipiyzc5tn3czdzkv6brdy
P932PMC publication ID3070822
P698PubMed publication ID21333656
P5875ResearchGate publication ID49847924

P2093author name stringEdward P Nikonowicz
Jiachen Wang
P2860cites workRNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac small nuclear ribonucleoproteinsQ24297661
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templatesQ24632342
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Structure of the 30S ribosomal subunitQ27627261
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragmentQ27629324
Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysisQ27631159
The kink-turn: a new RNA secondary structure motifQ27633834
Improving the accuracy of NMR structures of RNA by means of conformational database potentials of mean force as assessed by complete dipolar coupling cross-validationQ27640434
Solution structures of stem-loop RNAs that bind to the two N-terminal RNA-binding domains of nucleolinQ27642490
NMR Structures of (rGC U GA G GCU) 2 and (rGC G GA U GCU) 2 :  Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs † , ‡Q27643745
NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNAQ27659261
Plasticity of the RNA kink turn structural motifQ27659678
Structure of the K-turn U4 RNA: a combined NMR and SANS studyQ27661620
Structure of the P1 Helix from Group I Self-splicing IntronsQ27729766
Metals, motifs, and recognition in the crystal structure of a 5S rRNA domainQ27748294
The loop E-loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteinsQ27748806
Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: the bulge-helix-bulge motifQ27760634
The Xplor-NIH NMR molecular structure determination packageQ27860805
The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAsQ28212059
Interaction between the acceptor end of tRNA and the T box stimulates antitermination in the Bacillus subtilis tyrS gene: a new role for the discriminator baseQ28245821
Structure of the S-adenosylmethionine riboswitch regulatory mRNA elementQ28249513
Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactionsQ28290988
tRNAdb 2009: compilation of tRNA sequences and tRNA genesQ29616661
Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: disparity between conservation and functional requirementsQ33601128
Transcription termination control in bacteriaQ33879850
RNA bulges as architectural and recognition motifsQ33879873
tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosomeQ34037119
A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAsQ34067749
A structural database for k-turn motifs in RNA.Q34121656
Crystal structure of a self-splicing group I intron with both exonsQ34324406
Effects of magnesium ions on the stabilization of RNA oligomers of defined structuresQ34364255
Probing the structure and function of an archaeal C/D-box methylation guide sRNA.Q35012685
A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation controlQ35902022
Cloning and expression of the gene for bacteriophage T7 RNA polymeraseQ36266166
Isothermal titration calorimetry of RNA.Q37286663
Riboswitch RNAs: using RNA to sense cellular metabolismQ37367676
Assignment methodology for larger RNA oligonucleotides: application to an ATP-binding RNA aptamerQ38346966
Assignment of the L30-mRNA complex using selective isotopic labeling and RNA mutantsQ39729298
Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antiterminationQ39845327
Biochemical characterization of the kink-turn RNA motif.Q39936148
Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studiesQ40533971
tRNA regulation of gene expression: interactions of an mRNA 5'-UTR with a regulatory tRNA.Q41627355
RNA kink turns to the left and to the rightQ41891048
Structural differences within the loop E motif imply alternative mechanisms of viroid processingQ41923126
Molecular basis for RNA kink-turn recognition by the h15.5K small RNP proteinQ41966725
Comparative genomic analysis of T-box regulatory systems in bacteriaQ42061697
The kink-turn motif in RNA is dimorphic, and metal ion-dependentQ42087942
Ion-induced folding of a kink turn that departs from the conventional sequenceQ42957734
Pulse sequences for detection of NH2...N hydrogen bonds in sheared G . A mismatches via remote, non-exchangeable protonsQ43546488
Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPheQ44713872
Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target.Q46188253
Joint X-ray and NMR refinement of the yeast L30e-mRNA complexQ47227037
Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS geneQ48047513
The linkage between magnesium binding and RNA folding.Q52042749
Two- and three-dimensional 31P-driven NMR procedures for complete assignment of backbone resonances in oligodeoxyribonucleotidesQ57567807
An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15N labeled nucleic acidsQ70474792
Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNAQ70919651
Improved measurement of 13C, 31P J coupling constants in isotopically labeled RNAQ72165284
Conservation of a transcription antitermination mechanism in aminoacyl-tRNA synthetase and amino acid biosynthesis genes in gram-positive bacteriaQ72726497
Structure-mapping of the hairpin ribozyme. Magnesium-dependent folding and evidence for tertiary interactions within the ribozyme-substrate complexQ72819689
tRNA as a positive regulator of transcription antitermination in B. subtilisQ72873490
Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNAQ81741446
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectBacillus subtilisQ131238
solution structureQ99235426
P304page(s)99-117
P577publication date2011-04-22
P1433published inJournal of Molecular BiologyQ925779
P1476titleSolution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA
P478volume408

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cites work (P2860)
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