Phylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales

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Phylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales is …
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P819ADS bibcode2013PLoSO...855216N
P356DOI10.1371/JOURNAL.PONE.0055216
P932PMC publication ID3568101
P698PubMed publication ID23408961
P5875ResearchGate publication ID235621972

P2093author name stringRadhey S Gupta
Hafiz Sohail Naushad
P2860cites workInsights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome SequenceQ22065447
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Non-Gamma-Proteobacteria Gene Islands Contribute to the Xanthomonas GenomeQ61268357
Evolutionary placement of Xanthomonadales based on conserved protein signature sequences.Q35005477
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.Q35274650
Living in two worlds: the plant and insect lifestyles of Xylella fastidiosa.Q37142031
Lateral transfers of serine hydroxymethyltransferase (glyA) and UDP-N-acetylglucosamine enolpyruvyl transferase (murA) genes from free-living Actinobacteria to the parasitic chlamydiaeQ37861873
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Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificityQ38958195
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Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequencesQ45318431
Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences.Q45318876
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NAD biosynthesis evolution in bacteria: lateral gene transfer of kynurenine pathway in Xanthomonadales and Flavobacteriales.Q46250230
Replacement of the arginine biosynthesis operon in Xanthomonadales by lateral gene transferQ46729207
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Origin of diderm (Gram-negative) bacteria: antibiotic selection pressure rather than endosymbiosis likely led to the evolution of bacterial cells with two membranesQ24634094
Different patterns of evolution for duplicated DNA repair genes in bacteria of the Xanthomonadales groupQ24794343
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0Q26778434
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approachQ27860716
The rapid generation of mutation data matrices from protein sequencesQ27860880
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysisQ27860925
The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotesQ28138120
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Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial SubdivisionsQ29028436
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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.Q33331470
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The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited XanthomonadaceaeQ33519172
Signature proteins for the major clades of CyanobacteriaQ33526482
Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.Q33843911
Molecular signatures for the main phyla of photosynthetic bacteria and their subgroupsQ34111762
Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in CaliforniaQ34119142
The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteinsQ34132080
Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analysesQ34136097
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strainsQ34156241
The genetic core of the universal ancestorQ34181411
Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main cladesQ34207069
Evidence that eukaryotes and eocyte prokaryotes are immediate relativesQ34457672
Conserved indels in protein sequences that are characteristic of the phylum ActinobacteriaQ34466468
Molecular signatures in protein sequences that are characteristics of the phylum AquificaeQ34483147
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolismQ34758234
Comparative genomic analysis of plant-associated bacteriaQ34766410
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinantsQ34770892
Phylogenomics and protein signatures elucidating the evolutionary relationships among the GammaproteobacteriaQ34938405
Stenotrophomonas maltophilia: an emerging opportunist human pathogenQ34977790
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectphylogenomicsQ3381973
XanthomonadalesQ15298531
P304page(s)e55216
P577publication date2013-01-01
P1433published inPLOS OneQ564954
P1476titlePhylogenomics and molecular signatures for species from the plant pathogen-containing order xanthomonadales
P478volume8

Reverse relations

cites work (P2860)
Q30875189A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonad
Q42000907Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens
Q92526712Bacteria-Killing Type IV Secretion Systems
Q92539377Cultivar-Dependent Variation of the Cotton Rhizosphere and Endosphere Microbiome Under Field Conditions
Q91638602Deciphering Microbiome Related to Rusty Roots of Panax ginseng and Evaluation of Antagonists Against Pathogenic Ilyonectria
Q103002140Depthwise microbiome and isotopic profiling of a moderately saline microbial mat in a solar saltern
Q90050744Gene Tags Assessment by Comparative Genomics (GTACG): A User-Friendly Framework for Bacterial Comparative Genomics
Q47803645Gene encoding the CTP synthetase as an appropriate molecular tool for identification and phylogenetic study of the family Bifidobacteriaceae.
Q28276251Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification
Q34469278Phylogenomic and molecular demarcation of the core members of the polyphyletic pasteurellaceae genera actinobacillus, haemophilus, and pasteurella
Q99712450Phylogenomics insights into order and families of Lysobacterales
Q37616515Phylogenomics of "Candidatus Hepatoplasma crinochetorum," a lineage of mollicutes associated with noninsect arthropods
Q50351287Prevalence and Genetic Basis of Antimicrobial Resistance in Non-aureus Staphylococci Isolated from Canadian Dairy Herds.
Q64082602Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities
Q37593279Wells provide a distorted view of life in the aquifer: implications for sampling, monitoring and assessment of groundwater ecosystems.
Q27016623What makes Xanthomonas albilineans unique amongst xanthomonads?
Q92800151Wheat Straw Return Influences Nitrogen-Cycling and Pathogen Associated Soil Microbiota in a Wheat-Soybean Rotation System

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