Isobaric Tagging-Based Quantification for Proteomic Analysis: A Comparative Study of Spared and Affected Muscles from mdx Mice at the Early Phase of Dystrophy

scientific article (publication date: 2013)

Isobaric Tagging-Based Quantification for Proteomic Analysis: A Comparative Study of Spared and Affected Muscles from mdx Mice at the Early Phase of Dystrophy is …
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scholarly articleQ13442814

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P819ADS bibcode2013PLoSO...865831M
P356DOI10.1371/JOURNAL.PONE.0065831
P3181OpenCitations bibliographic resource ID3488886
P932PMC publication ID3688818
P698PubMed publication ID23823696
P5875ResearchGate publication ID245027990

P50authorCintia Yuri MatsumuraQ59684573
P2093author name stringMadeleine Durbeej
Bruno Menezes de Oliveira
Maria Julia Marques
P2860cites workThe involvement of galectin-1 in skeletal muscle determination, differentiation and regenerationQ35646691
Annexin 1: more than an anti-phospholipase proteinQ35732917
Eleventh Gaddum memorial lecture. Lipocortin and the mechanism of action of the glucocorticoidsQ35755755
Combination of two-dimensional electrophoresis and shotgun peptide sequencing in comparative proteomicsQ36010633
Advances in proteomic workflows for systems biologyQ36103071
Comparative proteomic profiling of dystroglycan-associated proteins in wild type, mdx, and Galgt2 transgenic mouse skeletal muscleQ36218358
Strength at the extracellular matrix-muscle interface.Q36315209
Evidence for export of a muscle lectin from cytosol to extracellular matrix and for a novel secretory mechanismQ36383370
Sarcoplasmic reticulum: the dynamic calcium governor of muscleQ36396221
Shotgun proteomics using the iTRAQ isobaric tagsQ36505967
Proteomics reveals drastic increase of extracellular matrix proteins collagen and dermatopontin in the aged mdx diaphragm model of Duchenne muscular dystrophyQ36613670
Saccharomyces cerevisiae HSP70 heat shock elements are functionally distinctQ36700618
Galectin-1, -2, and -3 exhibit differential recognition of sialylated glycans and blood group antigensQ36741513
Towards developing standard operating procedures for pre-clinical testing in the mdx mouse model of Duchenne muscular dystrophyQ36841572
The untiring search for the most complete proteome representation: reviewing the methodsQ37176915
Proteomics of skeletal muscle agingQ37380758
Proteomic profiling of animal models mimicking skeletal muscle disordersQ37817162
Constitutive properties, not molecular adaptations, mediate extraocular muscle sparing in dystrophic mdx miceQ38356050
Glucocorticoids, lipocortins and the immune responseQ40886086
Externalization of an endogenous chicken muscle lectin with in vivo developmentQ41367249
The 14 kDa beta-galactoside binding lectin in myoblast and myotube cultures: localization by confocal microscopyQ41637526
The molecular basis of activity-induced muscle injury in Duchenne muscular dystrophyQ41738877
Inhibition of human cytosolic phospholipase A2 by human annexin V.Q41814493
Drastic reduction of sarcalumenin in Dp427 (dystrophin of 427 kDa)-deficient fibres indicates that abnormal calcium handling plays a key role in muscular dystrophy.Q41823396
Expression of the L14 lectin during mouse embryogenesis suggests multiple roles during pre- and post-implantation developmentQ42612637
Proteomic assessment of the acute phase of dystrophin deficiency in mdx mice.Q43884201
Subproteomics analysis of Ca+-binding proteins demonstrates decreased calsequestrin expression in dystrophic mouse skeletal muscleQ45063439
Apoptosis precedes necrosis of dystrophin-deficient muscleQ46271408
Annexin expression in inflammatory myopathiesQ47279084
Heat shock protein families 70 and 90 in Duchenne muscular dystrophy and inflammatory myopathy: balancing muscle protection and destructionQ49050530
A novel protein, RTN-XS, interacts with both Bcl-XL and Bcl-2 on endoplasmic reticulum and reduces their anti-apoptotic activityQ24290665
Statistical significance for genomewide studiesQ24681264
The possible role of colligin/HSP47, a collagen-binding protein, in the pathogenesis of human and experimental fibrotic diseasesQ28145414
Quantitative mass spectrometry in proteomics: a critical reviewQ28238800
Proteomics by mass spectrometry: approaches, advances, and applicationsQ28243072
Peroxiredoxins: a historical overview and speculative preview of novel mechanisms and emerging concepts in cell signalingQ28252897
X chromosome-linked muscular dystrophy (mdx) in the mouseQ28589078
Characterization of ARC, apoptosis repressor interacting with CARD, in normal and dystrophin-deficient skeletal muscleQ28594773
The effect of galectin-1 on the differentiation of fibroblasts and myoblasts in vitroQ28594853
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagentsQ29547450
Annexins: from structure to functionQ29616171
Annexins: linking Ca2+ signalling to membrane dynamicsQ29619942
Annexin V, the regulator of phosphatidylserine-catalyzed inflammation and coagulation during apoptosisQ30427846
Proteomic analysis of mdx skeletal muscle: Great reduction of adenylate kinase 1 expression and enzymatic activityQ31027117
The rat liver mitochondrial proteinsQ31038331
Quantitative analysis of protein expression using amine-specific isobaric tags in Escherichia coli cells expressing rhsA elementsQ31172421
Two-dimensional database of mouse liver proteins. An updateQ31928111
Reduced expression of regucalcin in young and aged mdx diaphragm indicates abnormal cytosolic calcium handling in dystrophin-deficient muscle.Q33234154
Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF.Q33235253
Proteome analysis of the dystrophin-deficient MDX diaphragm reveals a drastic increase in the heat shock protein cvHSP.Q33249876
Eye muscle sparing by the muscular dystrophies: lessons to be learned?Q33840945
Proteomic Profiling of the Dystrophin-Deficient MDX Heart Reveals Drastically Altered Levels of Key Metabolic and Contractile Proteins.Q33871052
Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MSQ34192662
Requirement for annexin A1 in plasma membrane repairQ34652881
Muscular dystrophies involving the dystrophin-glycoprotein complex: an overview of current mouse models.Q34699458
Extracellular annexin A5: functions of phosphatidylserine-binding and two-dimensional crystallizationQ34760775
Visualization of dystrophic muscle fibers in mdx mouse by vital staining with Evans blue: evidence of apoptosis in dystrophin-deficient muscle.Q50756579
Sarcoplasmic-endoplasmic-reticulum Ca2+-ATPase and calsequestrin are overexpressed in spared intrinsic laryngeal muscles of dystrophin-deficient mdx mice.Q51757790
Urocortins improve dystrophic skeletal muscle structure and function through both PKA- and Epac-dependent pathways.Q54541284
Prevention of muscle fibrosis and myonecrosis in mdx mice by suramin, a TGF-β1 blocker.Q54630553
The mdx mouse diaphragm reproduces the degenerative changes of Duchenne muscular dystrophyQ59051261
Dysferlin, annexin A1, and mitsugumin 53 are upregulated in muscular dystrophy and localize to longitudinal tubules of the T-system with stretch.Q64981707
Developmentally regulated lectin in embryonic chick muscle and a myogenic cell lineQ67442472
Exercise induces myonuclear ubiquitination and apoptosis in dystrophin-deficient muscle of miceQ71960311
Comparative analysis of Dp427-deficient mdx tissues shows that the milder dystrophic phenotype of extraocular and toe muscle fibres is associated with a persistent expression of beta-dystroglycanQ73512517
DNA-fragmentation and expression of apoptosis-related proteins in muscular dystrophiesQ73687145
Evidence of a role for galectin-1 in acute inflammationQ73812480
Link of a new type of apoptosis-inducing gene ASY/Nogo-B to human cancerQ74332838
Exercise raises serum heat-shock protein 70 (Hsp70) levelsQ81088919
Muscle-specific BCL2 expression ameliorates muscle disease in laminin {alpha}2-deficient, but not in dystrophin-deficient, miceQ81502681
Shotgun proteomics: a qualitative approach applying isoelectric focusing on immobilized pH gradient and LC-MS/MSQ82072360
Calcium-binding proteins in skeletal muscles of the mdx mice: potential role in the pathogenesis of Duchenne muscular dystrophyQ82211054
Duchenne muscular dystrophyQ82698683
Proteomic analysis of dystrophic muscleQ82750943
Proteomic profiling of naturally protected extraocular muscles from the dystrophin-deficient mdx mouseQ84229096
Doxycycline ameliorates the dystrophic phenotype of skeletal and cardiac muscles in mdx miceQ84830150
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)e65831
P577publication date2013-01-01
P1433published inPLOS OneQ564954
P1476titleIsobaric Tagging-Based Quantification for Proteomic Analysis: A Comparative Study of Spared and Affected Muscles from mdx Mice at the Early Phase of Dystrophy
P478volume8

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cites work (P2860)
Q38828599A fragmented form of annexin A1 is secreted from C2C12 myotubes by electric pulse-induced contraction
Q86584247Changes in calsequestrin, TNF-α, TGF-β and MyoD levels during the progression of skeletal muscle dystrophy in mdx mice: a comparative analysis of the quadriceps, diaphragm and intrinsic laryngeal muscles
Q38217473Chaperoning heat shock proteins: proteomic analysis and relevance for normal and dystrophin-deficient muscle.
Q40955126Co-administration of deflazacort and doxycycline: a potential pharmacotherapy for Duchenne muscular dystrophy
Q53457776Comparative Label-Free Mass Spectrometric Analysis of Mildly versus Severely Affected mdx Mouse Skeletal Muscles Identifies Annexin, Lamin, and Vimentin as Universal Dystrophic Markers.
Q37566483Concurrent Label-Free Mass Spectrometric Analysis of Dystrophin Isoform Dp427 and the Myofibrosis Marker Collagen in Crude Extracts from mdx-4cv Skeletal Muscles
Q30274029Global Proteome Changes in the Rat Diaphragm Induced by Endurance Exercise Training
Q61811913Human Galectin-1 Improves Sarcolemma Stability and Muscle Vascularization in the mdx Mouse Model of Duchenne Muscular Dystrophy
Q53492409Long-Term Therapy With Omega-3 Ameliorates Myonecrosis and Benefits Skeletal Muscle Regeneration in Mdx Mice.
Q38717697Mass spectrometry-based protein analysis to unravel the tissue pathophysiology in Duchenne muscular dystrophy
Q38563300Pathoproteomic profiling of the skeletal muscle matrisome in dystrophinopathy associated myofibrosis
Q38820669Progressive muscle proteome changes in a clinically relevant pig model of Duchenne muscular dystrophy
Q35201194Quantitative proteomic analysis reveals metabolic alterations, calcium dysregulation, and increased expression of extracellular matrix proteins in laminin α2 chain-deficient muscle
Q35103127Recent advances in molecular imaging of premalignant gastrointestinal lesions and future application for early detection of barrett esophagus
Q40728538Reduction in mdx mouse muscle degeneration by low-intensity endurance exercise: a proteomic analysis in quadriceps muscle of exercised compared with sedentary mdx mice
Q58805825Secreted Frizzled-Related Protein-2 Inhibits Doxorubicin-Induced Apoptosis Mediated through the Akt-mTOR Pathway in Soleus Muscle
Q26770343The biochemical and mass spectrometric profiling of the dystrophin complexome from skeletal muscle
Q28076877The role of oxidative stress in skeletal muscle injury and regeneration: focus on antioxidant enzymes
Q30235426Virulence factor activity relationships (VFARs): a bioinformatics perspective

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