Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments

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Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments is …
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scholarly articleQ13442814

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P356DOI10.1128/MBIO.00699-16
P3181OpenCitations bibliographic resource ID4498228
P932PMC publication ID4958249
P698PubMed publication ID27435460

P50authorDennis BamfordQ23039738
Nina S AtanasovaQ82052633
Tatiana A DeminaQ87474582
Hanna M OksanenQ41431843
Janne J RavanttiQ41538276
P2093author name stringJulija Svirskaitė
Maija K Pietilä
P2860cites workPH1: an archaeovirus of Haloarcula hispanica related to SH1 and HHIV-2Q21284857
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
A unique group of virus-related, genome-integrating elements found solely in the bacterial family Thermaceae and the archaeal family HalobacteriaceaeQ24614325
Order to the viral universeQ24627197
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequencesQ24634141
Box-shaped halophilic bacteriaQ24649785
Identifying bacterial genes and endosymbiont DNA with GlimmerQ24653724
Structural and phylogenetic analysis of adenovirus hexons by use of high-resolution x-ray crystallographic, molecular modeling, and sequence-based methodsQ24683349
Transfection of haloarchaea by the DNAs of spindle and round haloviruses and the use of transposon mutagenesis to identify non-essential regionsQ82594863
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye bindingQ25938984
Basic local alignment search toolQ25938991
Mechanism of membranous tunnelling nanotube formation in viral genome deliveryQ27316755
Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structuresQ27619751
The structure and evolution of the major capsid protein of a large, lipid-containing DNA virusQ27639903
Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2Q27652015
Bacteriophage P23-77 Capsid Protein Structures Reveal the Archetype of an Ancient Branch from a Major Virus LineageQ27677799
Icosahedral bacteriophage ΦX174 forms a tail for DNA transport during infectionQ27687962
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Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide GelsQ27860531
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomesQ27860838
Tandem repeats finder: a program to analyze DNA sequencesQ27860863
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
Predicting coiled coils from protein sequencesQ27861097
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDaQ27861105
A novel lysis system in PM2, a lipid-containing marine double-stranded DNA bacteriophageQ28305466
Monitoring Physiological Changes in Haloarchaeal Cell during Virus ReleaseQ28601826
Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virusQ28757895
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Circos: an information aesthetic for comparative genomicsQ29547653
Marine viruses--major players in the global ecosystemQ29616822
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regionsQ29617560
Insight into the Assembly of Viruses with Vertical Single β-barrel Major Capsid Proteins.Q30152839
Gammasphaerolipovirus, a newly proposed bacteriophage genus, unifies viruses of halophilic archaea and thermophilic bacteria within the novel family Sphaerolipoviridae.Q30153453
Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functionsQ30155369
Pleolipoviridae, a newly proposed family comprising archaeal pleomorphic viruses with single-stranded or double-stranded DNA genomesQ31004550
Characterization of the archaeal thermophile Sulfolobus turreted icosahedral virus validates an evolutionary link among double-stranded DNA viruses from all domains of lifeQ33250133
Familial relationships in hyperthermo- and acidophilic archaeal viruses.Q33826727
Do viruses form lineages across different domains of life?Q34204656
The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequencesQ34336945
Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanicaQ34430958
Halophiles and their enzymes: negativity put to good use.Q34480329
Evolution of viral structureQ34776741
An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope.Q34965242
Salinity regulation of the interaction of halovirus SNJ1 with its host and alteration of the halovirus replication strategy to adapt to the variable ecosystemQ35597432
Snapshot of virus evolution in hypersaline environments from the characterization of a membrane-containing Salisaeta icosahedral phage 1.Q35935612
Insights into a viral lytic pathway from an archaeal virus-host system.Q36607351
Insights into head-tailed viruses infecting extremely halophilic archaeaQ36667881
A unique virus release mechanism in the ArchaeaQ37256984
Structure unifies the viral universeQ38000678
Archaeal viruses and bacteriophages: comparisons and contrasts.Q38197454
Comparison of lipid-containing bacterial and archaeal viruses.Q38363417
The unique vertex of bacterial virus PRD1 is connected to the viral internal membraneQ39752573
Bacteriophage PM2 has a protein capsid surrounding a spherical proteinaceous lipid coreQ39753182
Archaeal viruses multiply: temporal screening in a solar salternQ39999091
Archaeal viruses: living fossils of the ancient virosphere?Q41463717
The closest relatives of icosahedral viruses of thermophilic bacteria are among viruses and plasmids of the halophilic archaeaQ41940565
Analysis Tool Web Services from the EMBL-EBI.Q42265365
Comparative analysis of bacterial viruses Bam35, infecting a gram-positive host, and PRD1, infecting gram-negative hosts, demonstrates a viral lineageQ42607702
A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon SulfolobusQ42618414
The genomic structure of thermus bacteriophage {phi}IN93.Q42630518
Temperate membrane-containing halophilic archaeal virus SNJ1 has a circular dsDNA genome identical to that of plasmid pHH205.Q42658407
A snapshot of viral evolution from genome analysis of the tectiviridae familyQ42659161
Quantitative dissociation of archaeal virus SH1 reveals distinct capsid proteins and a lipid coreQ43021022
HF1 and HF2: novel bacteriophages of halophilic archaeaQ43023205
Global network of specific virus-host interactions in hypersaline environments.Q43033002
The transcription programme of the protein-primed halovirus SH1.Q43940809
Virus-host interactions in environments with a wide range of ionic strengthsQ45350758
In vitro DNA packaging of PRD1: a common mechanism for internal-membrane viruses.Q50485239
SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake.Q53861264
On-line monitoring of changes in host cell physiology during the one-step growth cycle of Bacillus phage Bam35Q57080996
A Novel Glycolipid and Phospholipid in the Purple Membrane†Q60238321
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectHaloarcula californiaeQ25932901
P304page(s)e00699-16
P577publication date2016-07-19
P1433published inmBioQ15817061
P1476titleArchaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments
P478volume7

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cites work (P2860)
Q64938947Broad Environmental Tolerance for a Salicola Host-Phage Pair Isolated from the Cargill Solar Saltworks, Newark, CA, USA.
Q59350057Extracellular membrane vesicles (EVs) in the three domains of life and beyond
Q90051707Global Organization and Proposed Megataxonomy of the Virus World
Q39144343HCIV-1 and Other Tailless Icosahedral Internal Membrane-Containing Viruses of the Family Sphaerolipoviridae.
Q64077140Halobacterium salinarum virus ChaoS9, a Novel Halovirus Related to PhiH1 and PhiCh1
Q41919449Halophilic viruses with varying biochemical and biophysical properties are amenable to purification with asymmetrical flow field-flow fractionation
Q64104530Structural basis for assembly of vertical single β-barrel viruses
Q40579890Vesicle-like virion of Haloarcula hispanica pleomorphic virus 3 preserves high infectivity in saturated salt.

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