Transcriptome analysis of different developmental stages of amphioxus reveals dynamic changes of distinct classes of genes during development

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Transcriptome analysis of different developmental stages of amphioxus reveals dynamic changes of distinct classes of genes during development is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1028868963
P356DOI10.1038/SREP23195
P932PMC publication ID4793263
P698PubMed publication ID26979494
P5875ResearchGate publication ID298734099

P50authorYinfeng ZhangQ58870141
Stephen Kwok-Wing TsuiQ41785013
Yuan ChenQ43116663
P2093author name stringBingyu Mao
Minghua Liu
Patrick Kwok-Shing Ng
Junyuan Chen
Kevin Yi Yang
Zuming Zhang
Wayne Junwei Zhou
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
The amphioxus genome and the evolution of the chordate karyotypeQ22122227
Full-length transcriptome assembly from RNA-Seq data without a reference genomeQ24620766
edgeR: a Bioconductor package for differential expression analysis of digital gene expression dataQ27860819
Calcium-calmodulin signalling pathway up-regulates glutamatergic synaptic function in non-pyramidal, fast spiking rat hippocampal CA1 neuronsQ28366216
The transcriptome of an amphioxus, Asymmetron lucayanum, from the Bahamas: a window into chordate evolutionQ28652543
Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomesQ28652639
Insights into neural crest development and evolution from genomic analysisQ28680739
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesQ29547172
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeQ29547458
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomesQ29547486
Characterization of Amphioxus AmphiVent, an evolutionarily conserved marker for chordate ventral mesodermQ33943023
Evolutionary developmental biology and genomicsQ34008221
Pou5f1 transcription factor controls zygotic gene activation in vertebrates.Q34364373
The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafishQ34664011
Deep mRNA sequencing analysis to capture the transcriptome landscape of zebrafish embryos and larvaeQ34735355
Developmentally controlled expression patterns of intermediate filament proteins in the cephalochordate Branchiostoma.Q52138913
An early Cambrian craniate-like chordateQ54281854
A possible Early Cambrian chordateQ54632433
The maternal-to-zygotic transition: a play in two actsQ34998975
The zebrafish transcriptome during early developmentQ35054161
Zebra fish Dnmt1 and Suv39h1 regulate organ-specific terminal differentiation during developmentQ35071363
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transitionQ35145522
Transcriptome dynamics and diversity in the early zebrafish embryoQ38171086
Nerve growth factor activation of the extracellular signal-regulated kinase pathway is modulated by Ca(2+) and calmodulin.Q39584779
A cDNA resource for the cephalochordate amphioxus Branchiostoma floridaeQ40050851
Expression of Bblhx3, a LIM-homeobox gene, in the development of amphioxus Branchiostoma belcheri tsingtauenseQ40636753
Expression of AmphiCoe, an amphioxus COE/EBF gene, in the developing central nervous system and epidermal sensory neuronsQ42457926
Isolation of a family of Drosophila POU domain genes expressed in early developmentQ42614694
Orthopedia, a novel homeobox-containing gene expressed in the developing CNS of both mouse and DrosophilaQ42692868
Retinoic acid signaling targets Hox genes during the amphioxus gastrula stage: insights into early anterior-posterior patterning of the chordate body planQ43242143
Fossil sister group of craniates: predicted and foundQ44215772
Role of Sp5 as an essential early regulator of neural crest specification in xenopusQ44242344
Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae).Q46186120
Neuroepithelial cells require fucosylated glycans to guide the migration of vagus motor neuron progenitors in the developing zebrafish hindbrain.Q47073576
Sequence and developmental expression of AmphiDll, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: insights into evolution of craniate forebrain and neural crest.Q48060757
Amphioxus goosecoid and the evolution of the head organizer and prechordal plateQ48948138
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjecttranscriptomeQ252857
P304page(s)23195
P577publication date2016-03-16
P1433published inScientific ReportsQ2261792
P1476titleTranscriptome analysis of different developmental stages of amphioxus reveals dynamic changes of distinct classes of genes during development
P478volume6

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cites work (P2860)
Q64958660Comparative transcriptome analysis provides global insight into gene expression differences between two orchid cultivars.
Q92542205Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation
Q90029232Evolutionary History of GLIS Genes Illuminates Their Roles in Cell Reprograming and Ciliogenesis
Q58483255Hagfish and lamprey Hox genes reveal conservation of temporal colinearity in vertebrates
Q64052055LanceletDB: an integrated genome database for lancelet, comparing domain types and combination in orthologues among lancelet and other species
Q49636448Transcriptome analysis of different growth stages of Aspergillus oryzae reveals dynamic changes of distinct classes of genes during growth.