Evolutionary genomics of fast evolving tunicates

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Evolutionary genomics of fast evolving tunicates is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1093/GBE/EVU122
P3181OpenCitations bibliographic resource ID3829344
P932PMC publication ID4122922
P698PubMed publication ID25008364
P5875ResearchGate publication ID263861644

P50authorFernando Alvarez-ValinQ56578780
P2093author name stringLuisa Berná
P2860cites workThe Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate OriginsQ22065826
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic OrganizationQ22065873
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Broad phylogenomic sampling improves resolution of the animal tree of lifeQ22337246
Deuterostome phylogeny reveals monophyletic chordates and the new phylum XenoturbellidaQ22337250
Tunicates and not cephalochordates are the closest living relatives of vertebratesQ22337256
Additional molecular support for the new chordate phylogenyQ22337403
Amino acid substitution matrices from protein blocksQ24563220
Constraints and plasticity in genome and molecular-phenome evolutionQ24594789
Deciphering deuterostome phylogeny: molecular, morphological and palaeontological perspectivesQ24652198
Seeing chordate evolution through the Ciona genome sequenceQ24791185
Adaptive protein evolution at the Adh locus in DrosophilaQ28302478
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicateQ28334396
Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bambooQ28743973
How fast is the sessile ciona?Q28749416
Operon conservation and the evolution of trans-splicing in the phylum NematodaQ28766438
Protein disorder prediction: implications for structural proteomicsQ29615736
Simple methods for testing the molecular evolutionary clock hypothesis.Q29617477
Cysteine function governs its conservation and degeneration and restricts its utilization on protein surfacesQ30394922
Cryptic speciation in a model invertebrate chordateQ30479582
Loss of ancestral genes in the genomic evolution of Ciona intestinalis.Q52657203
Predicting the oxidation state of cysteines by multiple sequence alignment.Q52890999
Accelerated Evolutionary Rate of Housekeeping Genes in TunicatesQ57027891
Conservation of amino acids in multiple alignments: aspartic acid has unexpected conservationQ57065043
Mechanism of the block to hybridization and selfing between the sympatric ascidians Ciona intestinalis and Ciona savignyiQ74056054
Peculiar patterns of amino acid substitution and conservation in the fast evolving tunicate Oikopleura dioicaQ82693137
Computational analysis of Ciona intestinalis operonsQ84072492
Huntingtin gene evolution in Chordata and its peculiar features in the ascidian Ciona genusQ33263046
Tunicates push the limits of animal evo-devoQ33798721
Adaptive protein evolution in DrosophilaQ34116884
Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts.Q34190701
The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalisQ34320884
Sounds of silence: synonymous nucleotides as a key to biological regulation and complexityQ34321074
The evolution of spliceosomal introns: patterns, puzzles and progressQ34495531
Extreme genomic variation in a natural populationQ34610281
Hox genes and the evolution of the arthropod body planQ35030473
The Ciona intestinalis genome: when the constraints are off.Q35136044
Trans-spliced leader addition to mRNAs in a cnidarianQ35891762
Mobile group II intronsQ35965810
SL trans-splicing: easy come or easy go?Q36083566
Hox genes are not always Colinear.Q36501239
Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations.Q37384959
Mapping the cysteine proteome: analysis of redox-sensing thiolsQ37826998
Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architectureQ37890999
Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraintsQ39327128
Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genomeQ39757380
Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importanceQ40607315
Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioicaQ42631494
Assembly of polymorphic genomes: algorithms and application to Ciona savignyiQ42930662
Unusual gene order and organization of the sea urchin hox cluster.Q46365247
Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioicaQ48175053
P275copyright licenseCreative Commons Attribution 3.0 UnportedQ14947546
P6216copyright statuscopyrightedQ50423863
P433issue7
P407language of work or nameEnglishQ1860
P921main subjecteukaryoteQ19088
genomicsQ222046
molecular evolutionQ856529
P304page(s)1724-1738
P577publication date2014-07-08
P1433published inGenome Biology and EvolutionQ15817736
P1476titleEvolutionary genomics of fast evolving tunicates
P478volume6

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cites work (P2860)
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Q52608870De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.
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Q92881309Exon 3 of the NUMB Gene Emerged in the Chordate Lineage Coopting the NUMB Protein to the Regulation of MDM2
Q35966468Functional Diversification after Gene Duplication: Paralog Specific Regions of Structural Disorder and Phosphorylation in p53, p63, and p73
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Q90622860Oikopleura dioica: An Emergent Chordate Model to Study the Impact of Gene Loss on the Evolution of the Mechanisms of Development
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Q59790181Rapid microevolution during recent range expansion to harsh environments
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