Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant

scientific article (publication date: December 2012)

Positionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1101/GR.131953.111
P8608Fatcat IDrelease_4yks7ybmyvdv5ml5aofpmb5uhq
P932PMC publication ID3514672
P698PubMed publication ID22835904
P5875ResearchGate publication ID230572630

P50authorAoife McLysaghtQ30361498
Takashi MakinoQ57317856
P2860cites workSea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic OrganizationQ22065873
Evolutionary erosion of yeast sex chromosomes by mating-type switching accidentsQ22066305
The amphioxus genome and the evolution of the chordate karyotypeQ22122227
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Genome evolution in yeastsQ22122491
Modification of linkage intensity by natural selectionQ24533341
Ensembl 2007Q24669862
Extensive genomic duplication during early chordate evolutionQ27104011
Development of human protein reference database as an initial platform for approaching systems biology in humansQ28206967
Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiaeQ28248858
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebratesQ28776288
Molecular evidence for an ancient duplication of the entire yeast genomeQ29547472
Specificity and evolvability in eukaryotic protein interaction networksQ33274191
All human-specific gene losses are present in the genome as pseudogenesQ33503331
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.Q33627522
Ohnologs in the human genome are dosage balanced and frequently associated with diseaseQ33927314
Modeling gene and genome duplications in eukaryotesQ33936694
The evolutionary dynamics of eukaryotic gene orderQ34319346
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeastsQ34502616
Measuring the evolutionary rate of protein-protein interactionQ35008468
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebratesQ35946485
The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplicationQ36458856
"Changing by doubling", the impact of Whole Genome Duplications in the evolution of eukaryotesQ37413656
Gene loss and evolutionary rates following whole-genome duplication in teleost fishesQ40311125
New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomesQ40829863
Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genesQ40903899
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genesQ41626345
Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspectiveQ42426511
Coparalogy: physical and functional clusterings in the human genome.Q42661653
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangementQ42921886
The gain and loss of genes during 600 million years of vertebrate evolutionQ42991063
Natural history and evolutionary principles of gene duplication in fungiQ47597341
Extensive duplication and reshuffling in the Arabidopsis genomeQ47844771
Robustness--it's not where you think it is.Q55033870
Interacting Gene Clusters and the Evolution of the Vertebrate Immune SystemQ57263515
Two rounds of whole genome duplication in the ancestral vertebrateQ21090230
The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae GenomeQ22065816
The yeast protein interaction network evolves rapidly and contains few redundant duplicate genesQ74071558
Is optimal gene order impossible?Q79808994
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectwhole genome duplicationQ63285481
gene lossQ115957864
whole genome sequencingQ2068526
P304page(s)2427-35
P577publication date2012-12-01
P1433published inGenome ResearchQ5533485
P1476titlePositionally biased gene loss after whole genome duplication: evidence from human, yeast, and plant
P478volume22

Reverse relations

cites work (P2860)
Q33881412A comprehensive protein-protein interactome for yeast PAS kinase 1 reveals direct inhibition of respiration through the phosphorylation of Cbf1.
Q34350098Differential retention and divergent resolution of duplicate genes following whole-genome duplication
Q28603066Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
Q38810622Evolution by gene loss.
Q26747070Evolution of Gene Duplication in Plants
Q28603922Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates
Q89602615Extinction of chromosomes due to specialization is a universal occurrence
Q64119418Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants
Q38967634Inferring gene duplications, transfers and losses can be done in a discrete framework
Q38793458Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis
Q36491514PGDD: a database of gene and genome duplication in plants
Q47846861Plant Genome Duplication Database
Q26866243Polyploidy-associated genome modifications during land plant evolution
Q53098633Rapid functional and evolutionary changes follow gene duplication in yeast.
Q92306923The Evolution of Gene Duplicates in Angiosperms and the Impact of Protein-Protein Interactions and the Mechanism of Duplication
Q91987169The lasting after-effects of an ancient polyploidy on the genomes of teleosts
Q90776971The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

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