A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome

scientific article (publication date: March 2012)

A living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/MOLBEV/MSR267
P932PMC publication ID3278475
P698PubMed publication ID22045999
P5875ResearchGate publication ID51763656

P50authorJeramiah J SmithQ30519048
Kenta SumiyamaQ55364214
P2093author name stringChris T Amemiya
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequencesQ22122236
Selfish DNA: the ultimate parasiteQ22122417
Selfish genes, the phenotype paradigm and genome evolutionQ22122418
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
GeneMark: web software for gene finding in prokaryotes, eukaryotes and virusesQ24530553
Evidence for a Hox14 paralog group in vertebratesQ79792265
Nuclear DNA contents of coelacanth erythrocytesQ93735745
Two living species of coelacanths?Q24653660
Transposition of a reconstructed Harbinger element in human cells and functional homology with two transposon-derived cellular genesQ24657906
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genomeQ24672901
BLAT—The BLAST-Like Alignment ToolQ24682492
Gene identification in novel eukaryotic genomes by self-training algorithmQ24814531
CLUSTAL: a package for performing multiple sequence alignment on a microcomputerQ28293854
Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fishQ28744186
Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genomeQ28748470
Endangered species hold clues to human evolutionQ28751653
Thousands of human mobile element fragments undergo strong purifying selection near developmental genesQ28757667
A family of conserved noncoding elements derived from an ancient transposable elementQ28768365
Functional noncoding sequences derived from SINEs in the mammalian genomeQ28768519
Coelacanth genome sequence reveals the evolutionary history of vertebrate genesQ28770070
Repbase Update, a database of eukaryotic repetitive elementsQ29547460
The origins of genome complexityQ29547507
A distal enhancer and an ultraconserved exon are derived from a novel retroposonQ29616555
De novo identification of repeat families in large genomesQ29617348
The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanthsQ31154649
Genome resource for the Indonesian coelacanth, Latimeria menadoensisQ33198602
Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensisQ33207726
Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locusQ33325756
Molecular paleontology of transposable elements from Arabidopsis thalianaQ33914728
PIFs meet Tourists and Harbingers: a superfamily reunionQ33947605
P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposasesQ33947891
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebratesQ34024461
Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensisQ34328982
Origin and evolution of human microRNAs from transposable elements.Q35846296
MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined featuresQ35914053
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotesQ36579703
MapToGenome: a comparative genomic tool that aligns transcript maps to sequenced genomesQ37173061
Harbinger transposons and an ancient HARBI1 gene derived from a transposaseQ43869789
Finding the genes in genomic DNA.Q47835342
The nuclear DNA content and chromatin ultrastructure of the coelacanth Latimeria chalumnae.Q53703231
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectfossilQ40614
P304page(s)985-93
P577publication date2012-03-01
P1433published inMolecular Biology and EvolutionQ1992656
P1476titleA living fossil in the genome of a living fossil: Harbinger transposons in the coelacanth genome
P478volume29

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cites work (P2860)
Q28681619Analysis of the transcriptome of the Indonesian coelacanth Latimeria menadoensis
Q28647874Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies
Q28677858Coelacanth genomes reveal signatures for evolutionary transition from water to land
Q37738607Evolution and Diversity of Transposable Elements in Vertebrate Genomes.
Q28659318Evolution and development of the tetrapod auditory system: an organ of Corti-centric perspective
Q45371583Evolutionary active transposable elements in the genome of the coelacanth.
Q28607271Exploring the rice dispensable genome using a metagenome-like assembly strategy
Q28662085GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus
Q100406199Large-scale variation in SNP density within the laboratory axolotl (Ambystoma mexicanum)
Q47256118Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.
Q58589081Rethinking Living Fossils
Q90243465Synergistic effects of common schizophrenia risk variants
Q41731105TSNARE1 polymorphisms are associated with schizophrenia susceptibility in Han Chinese
Q22122139The African coelacanth genome provides insights into tetrapod evolution
Q28607083The coelacanth: Can a "living fossil" have active transposable elements in its genome?
Q45077856Transcriptional activity of transposable elements in coelacanth
Q30586995Why coelacanths are not 'living fossils': a review of molecular and morphological data