Python as a federation tool for GENESIS 3.0

scientific article (publication date: 2012)

Python as a federation tool for GENESIS 3.0 is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2012PLoSO...729018C
P356DOI10.1371/JOURNAL.PONE.0029018
P3181OpenCitations bibliographic resource ID4604139
P932PMC publication ID3262781
P698PubMed publication ID22276101
P5875ResearchGate publication ID221776301

P50authorJames M. BowerQ6138365
P2093author name stringHugo Cornelis
Allan D Coop
Armando L Rodriguez
P2860cites workReal-Time linux dynamic clamp: a fast and flexible way to construct virtual ion channels in living cells.Q52049299
Evidence for a distinct light-induced calcium-dependent potassium current in Hermissenda crassicornis.Q52072744
PyNEST: A Convenient Interface to the NEST SimulatorQ21129072
Brian: a simulator for spiking neural networks in pythonQ21129073
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Towards NeuroML: model description methods for collaborative modelling in neuroscienceQ24522359
neuroConstruct: a tool for modeling networks of neurons in 3D spaceQ24677006
Emergent properties of networks of biological signaling pathwaysQ28293858
A federated design for a neurobiological simulation engine: the CBI federated software architectureQ28740327
Run-time interoperability between neuronal network simulators based on the MUSIC frameworkQ30386206
PyMOOSE: Interoperable Scripting in Python for MOOSE.Q30856938
Mobilizing the base of neuroscience data: the case of neuronal morphologiesQ31034812
MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification.Q31129385
PyNN: A Common Interface for Neuronal Network SimulatorsQ33405758
NEURON and PythonQ33406510
STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with PythonQ33485202
Visualizing neuronal network connectivity with connectivity pattern tablesQ33629073
Effects of imperfect dynamic clamp: computational and experimental resultsQ36663203
A Component-Based Extension Framework for Large-Scale Parallel Simulations in NEURON.Q43131958
An active membrane model of the cerebellar Purkinje cell II. Simulation of synaptic responsesQ44181172
Realtime tuning and verification of compartmental cell models using RTXI and GENESIS.Q45870218
An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice.Q45938295
Reconstruct: a free editor for serial section microscopyQ46427266
3D electron microscopic reconstruction of segments of rat cerebellar Purkinje cell dendrites receiving ascending and parallel fiber granule cell synaptic inputs.Q48662527
Channel density distributions explain spiking variability in the globus pallidus: a combined physiology and computer simulation database approach.Q49046385
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesNeuronQ7002467
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectPythonQ28865
GENESISQ5513172
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P304page(s)e29018
P577publication date2012-01-01
P1433published inPLOS OneQ564954
P1476titlePython as a federation tool for GENESIS 3.0
P478volume7

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cites work (P2860)
Q28740327A federated design for a neurobiological simulation engine: the CBI federated software architecture
Q35214753A flexible, interactive software tool for fitting the parameters of neuronal models.
Q60958324BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python
Q37261555Efficient calculation of the quasi-static electrical potential on a tetrahedral mesh and its implementation in STEPS.
Q46137447Interoperability in the GENESIS 3.0 Software Federation: the NEURON Simulator as an Example.
Q26741612Modeling the Cerebellar Microcircuit: New Strategies for a Long-Standing Issue
Q46388660Multiscale modeling with GENESIS 3, using the G-shell and Python
Q35057897Reaction-diffusion in the NEURON simulator
Q38437827Reproducibility in Computational Neuroscience Models and Simulations
Q39457709Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON.
Q41063782Software for Brain Network Simulations: A Comparative Study
Q30771787Stimfit: quantifying electrophysiological data with Python
Q28681611The Virtual Brain: a simulator of primate brain network dynamics
Q31033874Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models

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