CRISPR-mediated phage resistance and the ghost of coevolution past

scientific article (publication date: 22 July 2010)

CRISPR-mediated phage resistance and the ghost of coevolution past is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1098/RSPB.2010.0055
P8608Fatcat IDrelease_nsabuy53aze2rg3wtp62sesmem
P3181OpenCitations bibliographic resource ID1259434
P932PMC publication ID2880148
P698PubMed publication ID20236977
P5875ResearchGate publication ID42255039

P50authorPedro F ValeQ50987388
Tom J. LittleQ97597038
P2860cites workA guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomesQ21090166
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of actionQ21203780
CRISPR Provides Acquired Resistance Against Viruses in ProkaryotesQ21508827
The Beagle in a bottleQ22122206
Sex releases the speed limit on evolutionQ22122522
Soft sweeps: molecular population genetics of adaptation from standing genetic variationQ24544984
Rates of spontaneous mutationQ24548000
The evolution of RNAi as a defence against viruses and transposable elementsQ24651901
Antagonistic coevolution between a bacterium and a bacteriophageQ24670125
Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene productQ24679073
Host-parasite interactions and the evolution of gene expression.Q24794881
PILER-CR: fast and accurate identification of CRISPR repeatsQ27496514
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeatsQ27496515
Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defenseQ27655927
Viruses in the seaQ28272293
Coevolution of hosts and parasitesQ28273046
Next-generation DNA sequencing methodsQ28285066
Small CRISPR RNAs guide antiviral defense in prokaryotesQ28290898
CRISPR/Cas, the immune system of bacteria and archaeaQ29614423
Adaptation from standing genetic variationQ29614722
Molecular signatures of natural selectionQ29614731
CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaeaQ29614740
Natural selection on protein-coding genes in the human genomeQ29615352
CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNAQ29615786
Phage response to CRISPR-encoded resistance in Streptococcus thermophilusQ29617060
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaeaQ29617488
Differential impact of simultaneous migration on coevolving hosts and parasitesQ33268781
Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coliQ33294903
Host-parasite 'Red Queen' dynamics archived in pond sedimentQ33305626
Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174.Q33325656
Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomesQ33398526
Self versus non-self discrimination during CRISPR RNA-directed immunity.Q33620668
Infectious disease dynamics: What characterizes a successful invader?Q33772296
Identification of a novel family of sequence repeats among prokaryotesQ33957796
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeatsQ34004457
Ecological immunology: costly parasite defences and trade-offs in evolutionary ecology.Q34159212
Biological and biomedical implications of the co-evolution of pathogens and their hostsQ34161540
Detecting local adaptation in a natural plant-pathogen metapopulation: a laboratory vs. field transplant approach.Q50776509
Big questions, small worlds: microbial model systems in ecology.Q51189309
The implications of coevolutionary dynamics to host-parasite interactions.Q51663441
Evolutionary epidemiology and the dynamics of adaptation.Q51670388
Moving beyond common-garden and transplant designs: insight into the causes of local adaptation in species interactions.Q51689956
Increasing productivity accelerates host-parasite coevolution.Q51693581
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes.Q52422288
Trade-off between parasitoid resistance and larval competitive ability in Drosophila melanogaster.Q52558846
The effect of migration on local adaptation in a coevolving host-parasite system.Q53614683
Moving beyond Common‐Garden and Transplant Designs: Insight into the Causes of Local Adaptation in Species InteractionsQ57277865
The role of parasites in sympatric and allopatric host diversificationQ34162758
Fisher's ?fundamental theorem? made clearQ34216057
On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typingQ34682070
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses.Q34693068
Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions.Q34696019
Virus population dynamics and acquired virus resistance in natural microbial communitiesQ34780702
Host-parasite coevolution and patterns of adaptation across time and spaceQ34811139
CRISPR families of the crenarchaeal genus Sulfolobus: bidirectional transcription and dynamic propertiesQ34951113
Short motif sequences determine the targets of the prokaryotic CRISPR defence systemQ34953078
RNA silencing: a conserved antiviral immunity of plants and animalsQ35739920
A bacterial metapopulation adapts locally to phage predation despite global dispersalQ36388840
Engineered bacteriophage-defence systems in bioprocessingQ36484533
Ecological dynamics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa and its cyanophages in freshwaterQ36672664
A synthesis of experimental work on parasite local adaptationQ36820039
Instability of repetitive DNA sequences: the role of replication in multiple mechanismsQ37096065
Time-shift experiments as a tool to study antagonistic coevolutionQ37388145
CRISPR-based adaptive and heritable immunity in prokaryotesQ37568446
The role of the periplasmic maltose-binding protein and the outer-membrane phage lambda receptor in maltodextrin transport of Escherichia coliQ38356632
CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.Q39786713
Clonal interference and the evolution of RNA viruses.Q40929879
An indirect approach to imply trade-off shapes: population level patterns in resistance suggest a decreasingly costly resistance mechanism in a model insect systemQ42037848
Microbiology: metagenomicsQ44561879
Is there a cost of virus resistance in marine cyanobacteria?Q45398949
Invasion dynamics in spatially heterogeneous environmentsQ46603696
Local adaptation of bacteriophages to their bacterial hosts in soilQ48068532
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P433issue1691
P407language of work or nameEnglishQ1860
P921main subjectvirusQ808
bacteriaQ10876
bacteriophageQ165028
co-evolutionQ208841
CRISPRQ412563
molecular evolutionQ856529
adaptive immune systemQ1645075
P304page(s)2097-103
P577publication date2010-07-22
P1433published inProceedings of the Royal Society BQ2625424
P1476titleCRISPR-mediated phage resistance and the ghost of coevolution past
P478volume277

Reverse relations

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