The effect of inappropriate calibration: three case studies in molecular ecology

scientific article (publication date: 20 February 2008)

The effect of inappropriate calibration: three case studies in molecular ecology is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2008PLoSO...3.1615H
P356DOI10.1371/JOURNAL.PONE.0001615
P3181OpenCitations bibliographic resource ID3772431
P932PMC publication ID2229648
P698PubMed publication ID18286172
P5875ResearchGate publication ID5566274

P50authorBeth ShapiroQ831152
Urmas SaarmaQ12377817
James HaileQ32634714
Simon Y. W. HoQ86574828
Ross BarnettQ53931315
P2860cites workRelaxed phylogenetics and dating with confidenceQ21146068
The pedigree rate of sequence divergence in the human mitochondrial genome: there is a difference between phylogenetic and pedigree ratesQ24531956
Abundant mitochondrial DNA variation and world-wide population structure in humpback whalesQ24561649
Speciation durations and Pleistocene effects on vertebrate phylogeographyQ24672549
Ice sheets promote speciation in boreal birdsQ24678042
Genomic ancestry of the American puma (Puma concolor)Q28145419
Paleontological evidence to date the tree of lifeQ28268884
Molecular evidence for species-level distinctions in clouded leopardsQ28276890
The latitudinal gradient in recent speciation and extinction rates of birds and mammalsQ28293183
Bayesian coalescent inference of past population dynamics from molecular sequencesQ28306728
Elevated substitution rates estimated from ancient DNA sequencesQ28754490
DNA evidence for historic population size and past ecosystem impacts of gray whalesQ28757054
The tempo of avian diversification during the QuaternaryQ28764970
Pleistocene phylogeographic effects on avian populations and the speciation processQ28766102
Lack of phylogeography in European mammals before the last glaciationQ28770133
The genetic legacy of the Quaternary ice agesQ29547512
Time dependency of molecular rate estimates and systematic overestimation of recent divergence timesQ29547571
Comparative phylogeography and postglacial colonization routes in EuropeQ29547684
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft boundsQ29547833
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precisionQ29616173
Rise and fall of the Beringian steppe bisonQ29618161
Molecular clocks: when times are a-changin'Q29618602
Evidence for time dependency of molecular rate estimatesQ29618705
Historical population size change of bowhead whales inferred from DNA sequence polymorphism data.Q30661603
Dynamics of Pleistocene population extinctions in Beringian brown bearsQ30681777
New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birdsQ30939839
The tempo of avian diversification: a comment on Johnson and CiceroQ33239720
A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clockQ33246810
Genetic variation in Holocene bowhead whales from SvalbardQ33287325
Ancient DNA analysis reveals divergence of the cave bear, Ursus spelaeus, and brown bear, Ursus arctos, lineagesQ33936247
Mutation hot spots in mammalian mitochondrial DNA.Q34338838
Phylogeography of brown bears (Ursus arctos) of Alaska and paraphyly within the UrsidaeQ34391372
Mitochondrial phylogenetics and evolution of mysticete whales.Q34408148
Diet and Co-ecology of Pleistocene Short-Faced Bears and Brown Bears in Eastern BeringiaQ56039466
Age and growth estimates of bowhead whales ( Balaena mysticetus ) via aspartic acid racemizationQ56171428
Mitochondrial DNA Phylogeography of the North American Brown Bear and Implications for ConservationQ56672788
Global Changes During the Last 3 Million Years: Climatic Controls and Biotic ResponsesQ58397197
Relativity for molecular clocksQ59098301
The detection of shared and ancestral polymorphismsQ62140934
Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates.Q51709827
Can deleterious mutations explain the time dependency of molecular rate estimates?Q51721416
The genealogy of a sequence subject to purifying selection at multiple sites.Q52036045
High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans.Q52925865
Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear Ursus arctos in Europe.Q55065813
Staying out in the cold: glacial refugia and mitochondrial DNA phylogeography in ancient European brown bearsQ34716736
Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary ratesQ38551515
Rates of evolution in ancient DNA from Adélie penguins.Q39222218
Bayesian estimation of sequence damage in ancient DNA.Q40228734
Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogeniesQ40619594
New approaches to dating suggest a recent age for the human mtDNA ancestorQ41090714
Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae).Q41465677
The age of nonsynonymous and synonymous mutations in animal mtDNA and implications for the mildly deleterious theoryQ42561109
Glacial cycles and the tempo of avian speciationQ47296307
Pleistocene brown bears in the mid-continent of North AmericaQ47305518
Evidence for reproductive isolation between cave bear populationsQ47310247
Ancient DNA enables timing of the pleistocene origin and holocene expansion of two adélie penguin lineages in antarcticaQ47311170
Ancient DNA analyses reveal high mitochondrial DNA sequence diversity and parallel morphological evolution of late pleistocene cave bearsQ47316858
Calibration of mitochondrial DNA evolution in geeseQ47405414
Estimation of the mtDNA mutation rate in aging mice by proteome analysis and mathematical modelingQ47684811
Mitogenetic structure of brown bears (Ursus arctos L.) in northeastern Europe and a new time frame for the formation of European brown bear lineagesQ47818078
Microevolution of the mitochondrial DNA control region in the Japanese brown bear (Ursus arctos) populationQ47962223
A mitochondrial cytochrome B phylogeny of the Alectoris partridgesQ48059482
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue2
P407language of work or nameEnglishQ1860
P6104maintained by WikiProjectWikiProject EcologyQ10818384
P304page(s)e1615
P577publication date2008-02-20
P1433published inPLOS OneQ564954
P1476titleThe effect of inappropriate calibration: three case studies in molecular ecology
P478volume3