Pharmit: interactive exploration of chemical space

scientific article

Pharmit: interactive exploration of chemical space is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/SunseriK16
P356DOI10.1093/NAR/GKW287
P3181OpenCitations bibliographic resource ID2225063
P932PMC publication ID4987880
P698PubMed publication ID27095195

P50authorDavid Ryan KoesQ87730078
Jocelyn SunseriQ88259734
P2093author name stringDavid Ryan Koes
Jocelyn Sunseri
P2860cites workFreely available conformer generation methods: how good are they?Q51386173
LigBuilder: A Multi-Purpose Program for Structure-Based Drug DesignQ56340909
Comparison of Shape-Matching and Docking as Virtual Screening ToolsQ56853909
Open Babel: An open chemical toolboxQ21198766
Molecular Shape and Medicinal Chemistry: A PerspectiveQ27659860
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreadingQ27860652
PubChem Substance and Compound databasesQ27942588
Automated docking screens: a feasibility studyQ28256939
istar: a web platform for large-scale protein-ligand dockingQ28306830
ChEMBL: a large-scale bioactivity database for drug discoveryQ28315179
Enabling large-scale design, synthesis and validation of small molecule protein-protein antagonistsQ28481449
UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulationsQ29038555
LigandScout: 3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filtersQ31143138
iDrug: a web-accessible and interactive drug discovery and design platformQ33712915
Pharmer: efficient and exact pharmacophore searchQ33909006
e-LEA3D: a computational-aided drug design web serverQ33957660
Shape-based virtual screening with volumetric aligned molecular shapesQ34076210
Comparative analysis of pharmacophore screening toolsQ34286420
3Dmol.js: molecular visualization with WebGL.Q35367250
MTiOpenScreen: a web server for structure-based virtual screening.Q35597960
Indexing Volumetric Shapes with Matching and PackingQ35737951
ZINCPharmer: pharmacophore search of the ZINC databaseQ36088378
PharmaGist: a webserver for ligand-based pharmacophore detectionQ36749332
Lessons learned in empirical scoring with smina from the CSAR 2011 benchmarking exerciseQ37053828
Three-dimensional pharmacophore methods in drug discoveryQ37615315
Pharmacophore modeling and applications in drug discovery: challenges and recent advancesQ37723606
One hundred thousand mouse clicks down the road: selected online resources supporting drug discovery collected over a decadeQ38119805
Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarkingQ42251037
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issueW1
P407language of work or nameEnglishQ1860
P304page(s)W442-8
P577publication date2016-07-08
P1433published inNucleic Acids ResearchQ135122
P1476titlePharmit: interactive exploration of chemical space
P478volume44

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cites work (P2860)
Q92466112Exploring the Potentiality of Natural Products from Essential Oils as Inhibitors of Odorant-Binding Proteins: A Structure- and Ligand-Based Virtual Screening Approach To Find Novel Mosquito Repellents
Q47750928Function and structure-based screening of compounds, peptides and proteins to identify drug candidates.
Q90269266Identification of Novel Chemical Entities for Adenosine Receptor Type 2A Using Molecular Modeling Approaches
Q47279853Identification of new potential HIV-1 reverse transcriptase inhibitors by QSAR modeling and structure-based virtual screening
Q59771355Improved understanding of aqueous solubility modeling through topological data analysis
Q89152321Improving small molecule virtual screening strategies for the next generation of therapeutics
Q97520857Machine learning and AI-based approaches for bioactive ligand discovery and GPCR-ligand recognition
Q28598346Open source molecular modeling
Q90430431Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations
Q123351350Probing the molecular mechanisms of α-synuclein inhibitors unveils promising natural candidates through machine-learning QSAR, pharmacophore modeling, and molecular dynamics simulations
Q93263973Putative Inhibitors of SARS-CoV-2 Main Protease from A Library of Marine Natural Products: A Virtual Screening and Molecular Modeling Study
Q90429055Rapid Discovery of Aspartyl Protease Inhibitors Using an Anchoring Approach
Q58596849ezCADD: A Rapid 2D/3D Visualization Enabled Web Modeling Environment for Democratizing Computer-Aided Drug Design

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