Convergence of Molecular, Modeling, and Systems Approaches for an Understanding of the Escherichia coli Heat Shock Response

scientific article (publication date: September 2008)

Convergence of Molecular, Modeling, and Systems Approaches for an Understanding of the Escherichia coli Heat Shock Response is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1128/MMBR.00007-08
P3181OpenCitations bibliographic resource ID2794415
P932PMC publication ID2546862
P698PubMed publication ID18772288

P50authorCarol A. GrossQ56865044
Eric GuisbertQ42290461
P2093author name stringVirgil A Rhodius
Takashi Yura
P2860cites workEscherichia coli K-12: a cooperatively developed annotation snapshot--2005Q22065980
Identification of a turnover element in region 2.1 of Escherichia coli sigma32 by a bacterial one-hybrid approach.Q24524162
Translational induction of heat shock transcription factor sigma32: evidence for a built-in RNA thermosensorQ24606736
Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coliQ24680586
EcoCyc: a comprehensive database resource for Escherichia coliQ24796847
Structure of Hsp15 reveals a novel RNA-binding motifQ27621387
RNA methylation under heat shock controlQ27626992
Regulon and promoter analysis of the E. coli heat-shock factor, sigma32, reveals a multifaceted cellular response to heat stressQ28250175
Regulated degradation is a mechanism for suppressing stochastic fluctuations in gene regulatory networksQ28768148
Module-based analysis of robustness tradeoffs in the heat shock response systemQ33251546
Regulation of the heat-shock responseQ33632489
Multiple regions on the Escherichia coli heat shock transcription factor sigma32 determine core RNA polymerase binding specificityQ33725171
Regulation of proteolysis of the stationary-phase sigma factor RpoS.Q33725444
Surviving heat shock: control strategies for robustness and performanceQ33863105
Multiple Sigma Subunits and the Partitioning of Bacterial Transcription SpaceQ34267512
Genome-wide analysis of the biology of stress responses through heat shock transcription factorQ34347448
Synergistic roles of HslVU and other ATP-dependent proteases in controlling in vivo turnover of sigma32 and abnormal proteins in Escherichia coliQ34448690
Mapping temperature-induced conformational changes in the Escherichia coli heat shock transcription factor sigma 32 by amide hydrogen exchange.Q47611950
Levels of DnaK and DnaJ provide tight control of heat shock gene expression and protein repair in Escherichia coli.Q53755479
Extensive functional overlap between sigma factors in Escherichia coli.Q54458231
The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo.Q54489970
Molecular mechanism of transcription-repair coupling.Q54659174
DnaK, DnaJ, and GrpE heat shock proteins negatively regulate heat shock gene expression by controlling the synthesis and stability of sigma 32.Q54705160
Sigma 32 synthesis can regulate the synthesis of heat shock proteins in Escherichia coli.Q55060626
The heat shock response of E. coli is regulated by changes in the concentration of σ32Q59067218
Regulation of the heat shock response in E coli: involvement of positive and negative cis-acting elements in translation control of sigma 32 synthesisQ67712324
Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase IQ73484541
An internal region of the RpoH heat shock transcription factor is critical for rapid degradation by the FtsH proteaseQ73692382
Differential degradation of Escherichia coli sigma32 and Bradyrhizobium japonicum RpoH factors by the FtsH proteaseQ74026530
Heat shock regulation in the ftsH null mutant of Escherichia coli: dissection of stability and activity control mechanisms of sigma32 in vivoQ77581411
Marked instability of the sigma(32) heat shock transcription factor at high temperature. Implications for heat shock regulationQ78038063
Negative regulation of bacterial heat shock genesQ78163920
Degradation of sigma 32, the heat shock regulator in Escherichia coli, is governed by HflB.Q34450730
Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH.Q34532423
Chaperoning signaling pathways: molecular chaperones as stress-sensing 'heat shock' proteins.Q34704564
AAA+ proteins and substrate recognition, it all depends on their partner in crimeQ34921966
Toothpicks, serendipity and the emergence of the Escherichia coli DnaK (Hsp70) and GroEL (Hsp60) chaperone machinesQ35221656
Transcription of the mutL repair, miaA tRNA modification, hfq pleiotropic regulator, and hflA region protease genes of Escherichia coli K-12 from clustered Esigma32-specific promoters during heat shockQ35614147
Dynamic interplay between antagonistic pathways controlling the sigma 32 level in Escherichia coliQ35751609
A distinct segment of the sigma 32 polypeptide is involved in DnaK-mediated negative control of the heat shock response in Escherichia coli.Q35846053
Beyond transcription--new mechanisms for the regulation of molecular chaperonesQ36069364
Cellular functions, mechanism of action, and regulation of FtsH proteaseQ36135364
Analysis of sigma32 mutants defective in chaperone-mediated feedback control reveals unexpected complexity of the heat shock responseQ36140761
Iron-sulphur clusters and the problem with oxygenQ36375453
Regulatory region C of the E. coli heat shock transcription factor, sigma32, constitutes a DnaK binding site and is conserved among eubacteria.Q36795860
The DnaK chaperone modulates the heat shock response of Escherichia coli by binding to the sigma 32 transcription factorQ36958956
The Hsp70 chaperone machines of Escherichia coli: a paradigm for the repartition of chaperone functions.Q36962268
An analogue of the DnaJ molecular chaperone in Escherichia coliQ37558591
Interplay of two cis-acting mRNA regions in translational control of sigma 32 synthesis during the heat shock response of Escherichia coliQ37629677
Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma 32.Q37697966
A new heat shock protein that binds nucleic acidsQ38330093
Characterization of TreR, the major regulator of the Escherichia coli trehalose systemQ38345870
Evidence for an active role of the DnaK chaperone system in the degradation of sigma(32).Q38496040
Heat-induced synthesis of sigma32 in Escherichia coli: structural and functional dissection of rpoH mRNA secondary structureQ39493711
Role of region C in regulation of the heat shock gene-specific sigma factor of Escherichia coli, sigma32Q39496028
The C terminus of sigma(32) is not essential for degradation by FtsH.Q39527378
Nonnative proteins induce expression of the Bacillus subtilis CIRCE regulon.Q39566254
A study of the double mutation of dnaJ and cbpA, whose gene products function as molecular chaperones in Escherichia coliQ39837501
Conserved region 2.1 of Escherichia coli heat shock transcription factor sigma32 is required for modulating both metabolic stability and transcriptional activityQ40270839
Hsp15: a ribosome-associated heat shock proteinQ40387128
Isolation and sequence analysis of rpoH genes encoding sigma 32 homologs from gram negative bacteria: conserved mRNA and protein segments for heat shock regulationQ40396531
A chaperone network controls the heat shock response in E. coliQ40408687
A cycle of binding and release of the DnaK, DnaJ and GrpE chaperones regulates activity of the Escherichia coli heat shock transcription factor sigma32.Q41063873
Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivityQ41863185
Stochastic kinetic analysis of the Escherichia coli stress circuit using sigma(32)-targeted antisenseQ43728249
Physical interaction between heat shock proteins DnaK, DnaJ, and GrpE and the bacterial heat shock transcription factor sigma 32Q43977199
The activity of sigma 32 is reduced under conditions of excess heat shock protein production in Escherichia coliQ44527063
CbpA, a DnaJ homolog, is a DnaK co-chaperone, and its activity is modulated by CbpM.Q44927169
On the mechanism of FtsH-dependent degradation of the sigma 32 transcriptional regulator of Escherichia coli and the role of the Dnak chaperone machineQ47271506
P433issue3
P921main subjectEscherichia coliQ25419
P304page(s)545-554
P577publication date2008-09-01
P1433published inMicrobiology and Molecular Biology ReviewsQ6839270
P1476titleConvergence of molecular, modeling, and systems approaches for an understanding of the Escherichia coli heat shock response
P478volume72