| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1011456543 |
| P356 | DOI | 10.1186/1471-2148-7-S1-S4 |
| P3181 | OpenCitations bibliographic resource ID | 1214035 |
| P932 | PMC publication ID | 1796613 |
| P698 | PubMed publication ID | 17288577 |
| P2093 | author name string | Lartillot N | |
| Philippe H | |||
| Brinkmann H | |||
| P2860 | cites work | The evolutionary position of nematodes | Q21093615 |
| Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots? | Q24798589 | ||
| MRBAYES: Bayesian inference of phylogenetic trees | Q27860538 | ||
| A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach | Q27860716 | ||
| The rapid generation of mutation data matrices from protein sequences | Q27860880 | ||
| Evolutionary trees from DNA sequences: A maximum likelihood approach | Q27860898 | ||
| Molecular phylogenetics and the origins of placental mammals | Q28201892 | ||
| Phylogenomics and the reconstruction of the tree of life | Q28247594 | ||
| A Hidden Markov Model approach to variation among sites in rate of evolution | Q28274647 | ||
| Phylogenomics: the beginning of incongruence? | Q28298382 | ||
| Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions | Q28765882 | ||
| Genome-scale approaches to resolving incongruence in molecular phylogenies | Q29547249 | ||
| A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process | Q29547484 | ||
| Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods | Q29547744 | ||
| Evidence for a clade of nematodes, arthropods and other moulting animals | Q29547800 | ||
| Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia | Q29618582 | ||
| Analyzing site heterogeneity during protein evolution. | Q30328023 | ||
| Protein evolution with dependence among codons due to tertiary structure. | Q30333235 | ||
| A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data | Q30959556 | ||
| Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics | Q30968121 | ||
| Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis | Q33196499 | ||
| Modeling compositional heterogeneity | Q33208241 | ||
| The real 'kingdoms' of eukaryotes | Q34345007 | ||
| Assessing the impact of secondary structure and solvent accessibility on protein evolution. | Q34604178 | ||
| Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm. | Q42443914 | ||
| An alternative model of amino acid replacement | Q46269809 | ||
| Phylogenetic estimation of context-dependent substitution rates by maximum likelihood | Q46754566 | ||
| Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution | Q47840969 | ||
| Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies | Q47873575 | ||
| Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies. | Q47914282 | ||
| Computing Bayes factors using thermodynamic integration. | Q51947404 | ||
| Bayesian model adequacy and choice in phylogenetics. | Q52037923 | ||
| Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis. | Q52240074 | ||
| Modeling the covarion hypothesis of nucleotide substitution. | Q52252409 | ||
| Full reconstruction of Markov models on evolutionary trees: identifiability and consistency. | Q52295957 | ||
| An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. | Q52994145 | ||
| Dating the Cenancester of Organisms | Q59185517 | ||
| Modeling residue usage in aligned protein sequences via maximum likelihood | Q71852465 | ||
| How good are deep phylogenetic trees? | Q77892032 | ||
| Mapping mutations on phylogenies | Q78417328 | ||
| Site interdependence attributed to tertiary structure in amino acid sequence evolution | Q81445974 | ||
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | phylogenetics | Q171184 |
| P304 | page(s) | S4 | |
| P577 | publication date | 2007-02-08 | |
| P1433 | published in | BMC Evolutionary Biology | Q13418959 |
| P1476 | title | Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model | |
| P478 | volume | 7 Suppl 1 |
| Q33801744 | 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum |
| Q28601015 | 187-gene phylogeny of protozoan phylum Amoebozoa reveals a new class (Cutosea) of deep-branching, ultrastructurally unique, enveloped marine Lobosa and clarifies amoeba evolution |
| Q92332985 | A Novel Test for Absolute Fit of Evolutionary Models Provides a Means to Correctly Identify the Substitution Model and the Model Tree |
| Q39501450 | A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts). |
| Q33393406 | A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny |
| Q89865041 | A cnidarian parasite of salmon (Myxozoa: Henneguya) lacks a mitochondrial genome |
| Q34677321 | A comparative analysis of complete mitochondrial genomes among Hexapoda. |
| Q55129585 | A congruent phylogenomic signal places eukaryotes within the Archaea. |
| Q24604754 | A genome-sequence survey for Ascogregarina taiwanensis supports evolutionary affiliation but metabolic diversity between a Gregarine and Cryptosporidium |
| Q21560767 | A mitogenomic re-evaluation of the bdelloid phylogeny and relationships among the Syndermata |
| Q35821681 | A mixed branch length model of heterotachy improves phylogenetic accuracy |
| Q57795897 | A phylogenomic approach to reconstruct interrelationships of main clupeocephalan lineages with a critical discussion of morphological apomorphies |
| Q54936260 | A phylogenomic framework and timescale for comparative studies of tunicates. |
| Q34734376 | A phylogenomic investigation into the origin of metazoa. |
| Q34026101 | A phylometagenomic exploration of oceanic alphaproteobacteria reveals mitochondrial relatives unrelated to the SAR11 clade |
| Q30367472 | A site- and time-heterogeneous model of amino acid replacement. |
| Q21283876 | Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria |
| Q33293529 | Acoel flatworms are not platyhelminthes: evidence from phylogenomics |
| Q29619531 | Acoelomorph flatworms are deuterostomes related to Xenoturbella |
| Q22337403 | Additional molecular support for the new chordate phylogeny |
| Q48039005 | Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes). |
| Q33355169 | An amphioxus orthologue of the estrogen receptor that does not bind estradiol: insights into estrogen receptor evolution |
| Q34391778 | An archaeal origin of eukaryotes supports only two primary domains of life |
| Q34201879 | An experimentally informed evolutionary model improves phylogenetic fit to divergent lactamase homologs |
| Q116673465 | An exquisitely preserved tiny bark‐gnawing beetle (Coleoptera: Trogossitidae) from mid‐Cretaceous Burmese amber and the phylogeny of Trogossitidae |
| Q21283842 | An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models |
| Q35817553 | Ancestral state reconstruction of ontogeny supports a bilaterian affinity for Dickinsonia |
| Q59807123 | Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes |
| Q90960307 | Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids |
| Q42581794 | Ancient Origin of Chaperonin Gene Paralogs Involved in Ciliopathies |
| Q37428428 | Ancient origins of vertebrate-specific innate antiviral immunity |
| Q35095185 | Archaeal "dark matter" and the origin of eukaryotes |
| Q46269451 | Archigregarines of the English Channel revisited: New molecular data on Selenidium species including early described and new species and the uncertainties of phylogenetic relationships |
| Q91644502 | Architectural instability, inverted skews and mitochondrial phylogenomics of Isopoda: outgroup choice affects the long-branch attraction artefacts |
| Q28586406 | Arguments Reinforcing the Three-Domain View of Diversified Cellular Life |
| Q35083115 | Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates |
| Q24652218 | Back in time: a new systematic proposal for the Bilateria |
| Q30539440 | Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont |
| Q36969634 | Bayesian comparisons of codon substitution models |
| Q38367980 | Can quartet analyses combining maximum likelihood estimation and Hennigian logic overcome long branch attraction in phylogenomic sequence data? |
| Q30484027 | Careful with understudied phyla: the case of chaetognath. |
| Q28757616 | Chaetognath transcriptome reveals ancestral and unique features among bilaterians |
| Q40098735 | Characterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida |
| Q34304593 | Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae |
| Q48506094 | Cladogenesis and Genomic Streamlining in Extracellular Endosymbionts of Tropical Stink bugs. |
| Q28703553 | Cnidarian phylogenetic relationships as revealed by mitogenomics |
| Q54993499 | Combined morphological and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes. |
| Q21559544 | Comparative and phylogenomic evidence that the alphaproteobacterium HIMB59 is not a member of the oceanic SAR11 clade |
| Q93060732 | Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes |
| Q52880907 | Compositional and mutational rate heterogeneity in mitochondrial genomes and its effect on the phylogenetic inferences of Cimicomorpha (Hemiptera: Heteroptera). |
| Q52320299 | Convergent acquisition of non-embryonic development in styelid ascidians. |
| Q36031512 | Cross-validation to select Bayesian hierarchical models in phylogenetics |
| Q46299487 | Current Understanding of Ecdysozoa and its Internal Phylogenetic Relationships |
| Q51149317 | Cysteine peptidases of Eudiplozoon nipponicum: a broad repertoire of structurally assorted cathepsins L in contrast to the scarcity of cathepsins B in an invasive species of haematophagous monogenean of common carp. |
| Q90139119 | Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga) |
| Q34324589 | Deep metazoan phylogeny: when different genes tell different stories. |
| Q58634200 | Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies |
| Q34760069 | Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction. |
| Q45158968 | Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit. |
| Q28648492 | Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals |
| Q55251055 | Differences in Performance among Test Statistics for Assessing Phylogenomic Model Adequacy. |
| Q92239421 | Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons |
| Q90698563 | Disentangling the interplay of positive and negative selection forces that shaped mitochondrial genomes of Gammarus pisinnus and Gammarus lacustris |
| Q98943890 | Disrupted architecture and fast evolution of the mitochondrial genome of Argeia pugettensis (Isopoda): implications for speciation and fitness |
| Q28742103 | Dynamic evolution of base composition: causes and consequences in avian phylogenomics |
| Q21092204 | EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata |
| Q116142101 | Earliest fossil record of Corylophidae from Burmese amber and phylogeny of Corylophidae (Coleoptera: Coccinelloidea) |
| Q24569632 | Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda |
| Q46091758 | Embracing Uncertainty in Reconstructing Early Animal Evolution |
| Q28607314 | Embracing the comparative approach: how robust phylogenies and broader developmental sampling impacts the understanding of nervous system evolution |
| Q28261001 | Error, signal, and the placement of Ctenophora sister to all other animals |
| Q111629653 | Evaluating character partitioning and molecular models in plastid phylogenomics at low taxonomic levels: A case study using Amphilophium (Bignonieae, Bignoniaceae) |
| Q38984995 | Evaluation of Systematic Position of Helicoprorodontids and Chaeneids (Ciliophora, Litostomatea): An Attempt to Break Long Branches in 18S rRNA Gene Phylogenies. |
| Q37211393 | Evidence for an ancient adaptive episode of convergent molecular evolution. |
| Q33346455 | Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis |
| Q28710147 | Evolution and phylogeny of the mud shrimps (Crustacea: Decapoda) revealed from complete mitochondrial genomes |
| Q51930655 | Evolution of flower shape in Plantago lanceolata. |
| Q96225508 | Evolution of mitochondrial gene arrangements in Arcidae (Bivalvia: Arcida) and their phylogenetic implications |
| Q41023638 | Evolution of viruses and cells: do we need a fourth domain of life to explain the origin of eukaryotes? |
| Q58736264 | Evolutionary Genomics of Metchnikovella incurvata (Metchnikovellidae): An Early Branching Microsporidium |
| Q99711930 | Evolutionary history of dimethylsulfoniopropionate (DMSP) demethylation enzyme DmdA in marine bacteria |
| Q34325882 | Evolutionary history of the TBP-domain superfamily |
| Q42454548 | Examining the utility of categorical models and alleviating artifacts in phylogenetic reconstruction of the Squamata (Reptilia). |
| Q36938008 | Exploring fast computational strategies for probabilistic phylogenetic analysis |
| Q54500198 | Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) |
| Q31027366 | Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa |
| Q53281210 | Extreme halophilic archaea derive from two distinct methanogen Class II lineages. |
| Q28604118 | Family-Level Sampling of Mitochondrial Genomes in Coleoptera: Compositional Heterogeneity and Phylogenetics |
| Q33886674 | Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi |
| Q28658690 | From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes |
| Q63508188 | Gene Selection and Evolutionary Modeling Affect Phylogenomic Inference of Neuropterida Based on Transcriptome Data |
| Q37353510 | Genome desertification in eutherians: can gene deserts explain the uneven distribution of genes in placental mammalian genomes? |
| Q38820564 | Genome sequencing-assisted identification and the first functional validation of N-acyl-homoserine-lactone synthases from the Sphingomonadaceae family. |
| Q46280604 | Genome-Based Analyses of Six Hexacorallian Species Reject the "Naked Coral" Hypothesis |
| Q33740110 | Genome-wide miRNA seeds prediction in Archaea |
| Q29010741 | Genomic Support for a Moa-Tinamou Clade and Adaptive Morphological Convergence in Flightless Ratites |
| Q28650497 | Genomic diversification in strains of Rickettsia felis Isolated from different arthropods |
| Q61799164 | Genomic diversity, lifestyles and evolutionary origins of DPANN archaea |
| Q29220832 | Giant viruses with an expanded complement of translation system components |
| Q56975569 | Group I Intron–Mediated Trans-splicing in Mitochondria of Gigaspora rosea and a Robust Phylogenetic Affiliation of Arbuscular Mycorrhizal Fungi with Mortierellales |
| Q28834051 | Heme pathway evolution in kinetoplastid protists |
| Q44856461 | Hennig's orphans revisited: testing morphological hypotheses in the "Opomyzoidea" (Diptera: Schizophora). |
| Q38926584 | Highly Conserved Elements and Chromosome Structure Evolution in Mitochondrial Genomes in Ciliates. |
| Q33509400 | Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum |
| Q36238766 | Horizontal gene transfer drives the evolution of Rh50 permeases in prokaryotes |
| Q33765805 | Human Chitotriosidase: Catalytic Domain or Carbohydrate Binding Module, Who's Leading HCHT's Biological Function |
| Q30559723 | Impact of missing data on phylogenies inferred from empirical phylogenomic data sets |
| Q28755823 | Improvement of molecular phylogenetic inference and the phylogeny of Bilateria |
| Q46263241 | Incongruence among different mitochondrial regions: a case study using complete mitogenomes. |
| Q39023260 | Inferring Trees |
| Q33317677 | Inferring evolution of fish proteins: the globin case study |
| Q33940838 | Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses |
| Q92243222 | Insights into the phylogeny of Hemiptera from increased mitogenomic taxon sampling |
| Q111630344 | Insufficient resolving power of mitogenome data in deciphering deep phylogeny of Holometabola |
| Q33790927 | Integrative modeling of gene and genome evolution roots the archaeal tree of life |
| Q41692210 | Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements |
| Q63647644 | Investigating the Origins of Membrane Phospholipid Biosynthesis Genes Using Outgroup-Free Rooting |
| Q36904221 | LS³: A Method for Improving Phylogenomic Inferences When Evolutionary Rates Are Heterogeneous among Taxa |
| Q110668811 | Lack of support for Deuterostomia prompts reinterpretation of the first Bilateria |
| Q43031591 | Large-scale phylogenomic analyses indicate a deep origin of primary plastids within cyanobacteria. |
| Q46135673 | Lines of evidence for horizontal gene transfer of a phenazine producing operon into multiple bacterial species |
| Q36399040 | Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes |
| Q31162062 | Long-branch attraction and the phylogeny of true water bugs (Hemiptera: Nepomorpha) as estimated from mitochondrial genomes |
| Q39636699 | Massively parallel RNA sequencing identifies a complex immune gene repertoire in the lophotrochozoan Mytilus edulis |
| Q116673276 | Mastigocoleidae fam. nov., a New Mesozoic Beetle Family and the Early Evolution of Dryopoidea (Coleoptera) |
| Q42373942 | Membrane Trafficking Modulation during Entamoeba Encystation |
| Q92705227 | Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda |
| Q98944969 | Mitochondrial genomes illuminate the evolutionary history of the Western honey bee (Apis mellifera) |
| Q57399781 | Mitochondrial phylogenomics illuminates the evolutionary history of Neuropterida |
| Q57077502 | Mitogenomics of Vetigastropoda: insights into the evolution of pallial symmetry |
| Q91657115 | Mitogenomics suggests a sister relationship of Relicanthus daphneae (Cnidaria: Anthozoa: Hexacorallia: incerti ordinis) with Actiniaria |
| Q58697822 | Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence |
| Q34309390 | Molecular evolution of the Helicobacter pylori vacuolating toxin gene vacA |
| Q21090959 | Molecular phylogeny and evolution of parabasalia with improved taxon sampling and new protein markers of actin and elongation factor-1α |
| Q28610951 | Molecular phylogeny of Squaliformes and first occurrence of bioluminescence in sharks |
| Q98831088 | Most Cephalaspidea have a shell, but transcriptomes can provide them with a backbone (Gastropoda: Heterobranchia) |
| Q36259453 | Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae). |
| Q55044723 | Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora. |
| Q34112616 | Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches |
| Q33740739 | Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles |
| Q90113422 | New Data, Old Story: Molecular Data Illuminate the Tribal Relationships among Rove Beetles of the Subfamily Staphylininae (Coleoptera: Staphylinidae) |
| Q90671720 | New patellogastropod mitogenomes help counteracting long-branch attraction in the deep phylogeny of gastropod mollusks |
| Q33371078 | Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs |
| Q34178694 | Novel gene rearrangements in the mitochondrial genome of a webspinner, Aposthonia japonica (Insecta: Embioptera). |
| Q88054160 | On how many fundamental kinds of cells are present on Earth: looking for phylogenetic traits that would allow the identification of the primary lines of descent |
| Q28655429 | On the age of eukaryotes: evaluating evidence from fossils and molecular clocks |
| Q22066358 | On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales |
| Q33500837 | PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis |
| Q37646636 | Pairwise diversity and tMRCA as potential markers for HIV infection recency |
| Q37291105 | Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say. |
| Q33652954 | Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets |
| Q46598611 | PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment |
| Q28754609 | Phylogenetic analyses: A toolbox expanding towards Bayesian methods |
| Q41966236 | Phylogenetic mixture models for proteins |
| Q36085321 | Phylogenetic relationships among superfamilies of Neritimorpha (Mollusca: Gastropoda). |
| Q89361067 | Phylogenetic relationships of the conoidean snails (Gastropoda: Caenogastropoda) based on mitochondrial genomes |
| Q34184295 | Phylogenetic signal and noise: predicting the power of a data set to resolve phylogeny |
| Q95328715 | Phylogenetic tree building in the genomic age |
| Q24650621 | Phylogenomic analyses of lophophorates (brachiopods, phoronids and bryozoans) confirm the Lophotrochozoa concept |
| Q21245376 | Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria) |
| Q30367458 | Phylogenomic analyses uncover origin and spread of the Wolbachia pandemic. |
| Q28306440 | Phylogenomic analyses unravel annelid evolution |
| Q33817491 | Phylogenomic analysis of "red" genes from two divergent species of the "green" secondary phototrophs, the chlorarachniophytes, suggests multiple horizontal gene transfers from the red lineage before the divergence of extant chlorarachniophytes |
| Q28658767 | Phylogenomic analysis of echinoderm class relationships supports Asterozoa |
| Q28260462 | Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade |
| Q28728264 | Phylogenomic resolution of paleozoic divergences in harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data |
| Q47249240 | Phylogenomics |
| Q49203027 | Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group. |
| Q39888475 | Phylogenomics of 'Discosea': A new molecular phylogenetic perspective on Amoebozoa with flat body forms |
| Q91619552 | Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea |
| Q63507967 | Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error |
| Q91826581 | Phylogenomics provides robust support for a two-domains tree of life |
| Q24656961 | Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes |
| Q30863609 | Phylogeny and evolution of Rab7 and Rab9 proteins |
| Q100501360 | Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders |
| Q59330565 | Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets |
| Q37841537 | Plastid establishment did not require a chlamydial partner |
| Q35569853 | Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum |
| Q33511024 | Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids |
| Q48171598 | Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids |
| Q34416122 | Platyzoan paraphyly based on phylogenomic data supports a noncoelomate ancestry of spiralia |
| Q28607617 | Probabilistic models of eukaryotic evolution: time for integration |
| Q21283902 | Proceedings of the First International Conference on Phylogenomics. March 15-19, 2006. Quebec, Canada |
| Q28730591 | Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias |
| Q36525066 | Quantifying homologous replacement of loci between haloarchaeal species. |
| Q47986773 | Random roots and lineage sorting |
| Q64916718 | Rapid Genetic Code Evolution in Green Algal Mitochondrial Genomes. |
| Q39705218 | Reconstructing the fungal tree of life using phylogenomics and a preliminary investigation of the distribution of yeast prion-like proteins in the fungal kingdom. |
| Q49460384 | Reconstruction of the sialylation pathway in the ancestor of eukaryotes. |
| Q31088500 | Reducing long-branch effects in multi-protein data uncovers a close relationship between Alveolata and Rhizaria. |
| Q37430057 | Reduction and expansion in microsporidian genome evolution: new insights from comparative genomics |
| Q52617275 | Regulation of early endosomes across eukaryotes: Evolution and functional homology of Vps9 proteins. |
| Q42446614 | Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence |
| Q36198052 | Resources for phylogenomic analyses of Australian terrestrial vertebrates. |
| Q36033086 | RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language |
| Q67234679 | Revisiting metazoan phylogeny with genomic sampling of all phyla |
| Q48608592 | Ribosomal proteins: toward a next generation standard for prokaryotic systematics? |
| Q27324082 | Rooting the tree of life: the phylogenetic jury is still out |
| Q33322015 | Saturation and base composition bias explain phylogenomic conflict in Plasmodium. |
| Q46214761 | Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny |
| Q55081882 | Sequencing of complete mitochondrial genomes confirms synonymization of Hyalomma asiaticum asiaticum and kozlovi, and advances phylogenetic hypotheses for the Ixodidae. |
| Q33793566 | Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference |
| Q34325762 | Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species |
| Q28748938 | Snake mitochondrial genomes: phylogenetic relationships and implications of extended taxon sampling for interpretations of mitogenomic evolution |
| Q30947994 | Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample |
| Q28741772 | Sources of signal in 62 protein-coding nuclear genes for higher-level phylogenetics of arthropods |
| Q34278010 | Strepsiptera, phylogenomics and the long branch attraction problem |
| Q36364607 | Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems. |
| Q28661449 | Substantial loss of conserved and gain of novel MicroRNA families in flatworms |
| Q38958871 | Substitution Model Adequacy and Assessing the Reliability of Estimates of Virus Evolutionary Rates and Time Scales |
| Q35171379 | Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes |
| Q57833527 | Tetraconatan phylogeny with special focus on Malacostraca and Branchiopoda: highlighting the strength of taxon-specific matrices in phylogenomics |
| Q28659965 | The "naked coral" hypothesis revisited--evidence for and against scleractinian monophyly |
| Q22122176 | The Amphimedon queenslandica genome and the evolution of animal complexity |
| Q39593552 | The Identification of the Closest Living Relative(s) of Tetrapods: Phylogenomic Lessons for Resolving Short Ancient Internodes |
| Q28603249 | The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference |
| Q89682342 | The Mitochondrial Genome of Amara aulica (Coleoptera, Carabidae, Harpalinae) and Insights into the Phylogeny of Ground Beetles |
| Q95840948 | The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes |
| Q64249898 | The Mitochondrial Genomes of Neuropteridan Insects and Implications for the Phylogeny of Neuroptera |
| Q24603374 | The Ras protein superfamily: evolutionary tree and role of conserved amino acids |
| Q21560877 | The SAR11 group of alpha-proteobacteria is not related to the origin of mitochondria |
| Q24646611 | The archaebacterial origin of eukaryotes |
| Q42870646 | The comb jelly opsins and the origins of animal phototransduction. |
| Q35200845 | The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera |
| Q21128793 | The genome sequence of the colonial chordate, Botryllus schlosseri |
| Q34717858 | The impact of paralogy on phylogenomic studies - a case study on annelid relationships |
| Q91526163 | The mitochondrial genomes of palaeopteran insects and insights into the early insect relationships |
| Q38369765 | The mitogenome phylogeny of Adephaga (Coleoptera). |
| Q21284105 | The phylogenetic position of Acoela as revealed by the complete mitochondrial genome of Symsagittifera roscoffensis |
| Q38755271 | The phylogenetic position of dicyemid mesozoans offers insights into spiralian evolution. |
| Q39001320 | The phylogenetic position of eriophyoid mites (superfamily Eriophyoidea) in Acariformes inferred from the sequences of mitochondrial genomes and nuclear small subunit (18S) rRNA gene |
| Q110445072 | The phylogeny of Galerucinae (Coleoptera: Chrysomelidae) and the performance of mitochondrial genomes in phylogenetic inference compared to nuclear rRNA genes |
| Q51759170 | The planarian nanos-like gene Smednos is expressed in germline and eye precursor cells during development and regeneration. |
| Q34042012 | The plastid ancestor originated among one of the major cyanobacterial lineages |
| Q34320884 | The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis |
| Q45802457 | The prevalence of multifurcations in tree-space and their implications for tree-search |
| Q28752077 | The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods |
| Q41070184 | Three-dimensional structure model and predicted ATP interaction rewiring of a deviant RNA ligase 2. |
| Q21143783 | To be or not to be a flatworm: the acoel controversy |
| Q57255613 | Toward genome-enabled mycology |
| Q21192750 | Translational machinery of the chaetognath Spadella cephaloptera: a transcriptomic approach to the analysis of cytosolic ribosomal protein genes and their expression |
| Q55026364 | Transporter gene acquisition and innovation in the evolution of Microsporidia intracellular parasites. |
| Q21283749 | Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny |
| Q106699680 | Ultra‐Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea) |
| Q28708935 | Understanding phylogenetic incongruence: lessons from phyllostomid bats |
| Q98281016 | Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution |
| Q102096979 | Unexpected rDNA divergence between two morphologically minimalistic nematodes with description of a new species (Tylenchomorpha: Tylenchidae) |
| Q28606423 | Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte? |
| Q97885068 | Very few sites can reshape the inferred phylogenetic tree |
| Q28742917 | What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny |
| Q31131025 | Who Let the CAT Out of the Bag? Accurately Dealing with Substitutional Heterogeneity in Phylogenomic Analyses. |
| Q36261842 | Whole mitochondrial genome of the Ram's Horn Squid shines light on the phylogenetic position of the monotypic order Spirulida (Haeckel, 1896). |
| Q91819178 | tRNA functional signatures classify plastids as late-branching cyanobacteria |
Search more.