Incorporation of prior phase information strengthens maximum-likelihood structure refinement

scientific article (publication date: November 1998)

Incorporation of prior phase information strengthens maximum-likelihood structure refinement is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1107/S0907444998004119
P3181OpenCitations bibliographic resource ID4516622
P698PubMed publication ID10089505

P50authorRandy ReadQ18011401
P2093author name stringN S Pannu
E J Dodson
G N Murshudov
P433issuePt 6 Pt 2
P407language of work or nameEnglishQ1860
P304page(s)1285-1294
P577publication date1998-11-01
P1433published inActa Crystallographica Section D: Biological CrystallographyQ1933255
P1476titleIncorporation of prior phase information strengthens maximum-likelihood structure refinement
P478volume54

Reverse relations

cites work (P2860)
Q34595353A common allosteric site and mechanism in caspases
Q24337551A large-scale conformational change couples membrane recruitment to cargo binding in the AP2 clathrin adaptor complex
Q42562463A multivariate likelihood SIRAS function for phasing and model refinement
Q27655559Allosteric Site Variants of Haemophilus influenzae β-Carbonic Anhydrase
Q27651006An Allosteric Circuit in Caspase-1
Q56877799Annealing in crystallography: a powerful optimization tool
Q27678525Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum
Q27641015Azide and acetate complexes plus two iron-depleted crystal structures of the di-iron enzyme delta9 stearoyl-acyl carrier protein desaturase. Implications for oxygen activation and catalytic intermediates
Q27660367Biochemical and Structural Characterization of Mycobacterium tuberculosis β-Lactamase with the Carbapenems Ertapenem and Doripenem
Q27680025Can Inhibitor-Resistant Substitutions in the Mycobacterium tuberculosis  -Lactamase BlaC Lead to Clavulanate Resistance?: a Biochemical Rationale for the Use of  -Lactam- -Lactamase Inhibitor Combinations
Q27667574Cocrystallization studies of full-length recombinant butyrylcholinesterase (BChE) with cocaine
Q28204441Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains
Q46890395Conformation-assisted inhibition of protein-tyrosine phosphatase-1B elicits inhibitor selectivity over T-cell protein-tyrosine phosphatase
Q28353924Conformational disorder of proteins assessed by real-space molecular dynamics refinement.
Q27642249Crystal structure and snapshots along the reaction pathway of a family 51 -L-arabinofuranosidase
Q27640690Crystal structure of Drosophila angiotensin I-converting enzyme bound to captopril and lisinopril
Q27666455Crystal structure of a novel non-Pfam protein PF2046 solved using low resolution B-factor sharpening and multi-crystal averaging methods
Q27694569Crystal structure of active site mutant of antileukemic L-asparaginase reveals conserved zinc-binding site
Q27642730Crystal structure of human tryptophanyl-tRNA synthetase catalytic fragment: insights into substrate recognition, tRNA binding, and angiogenesis activity
Q27627255Crystal structure of the GAP domain of Gyp1p: first insights into interaction with Ypt/Rab proteins
Q27486092Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus
Q27620244Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction
Q24303649Crystal structure of the human two-pore domain potassium channel K2P1
Q27619350Crystal structure of the vesicular transport protein Sec17: implications for SNAP function in SNARE complex disassembly
Q27626706Crystal structure of the worm NitFhit Rosetta Stone protein reveals a Nit tetramer binding two Fhit dimers
Q34160716Crystal structure of β-hexosaminidase B in complex with pyrimethamine, a potential pharmacological chaperone
Q27647792Crystallization and X-ray structure of full-length recombinant human butyrylcholinesterase
Q31058395Crystallization and characterization of the thallium form of the Oxytricha nova G-quadruplex
Q46458226Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases
Q47612838Design, synthesis and biological evaluations of N-Hydroxy thienopyrimidine-2,4-diones as inhibitors of HIV reverse transcriptase-associated RNase H.
Q28546429Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease
Q28552184Discovery and Characterization of a Thermostable and Highly Halotolerant GH5 Cellulase from an Icelandic Hot Spring Isolate
Q27629798Dramatic structural and thermodynamic consequences of repacking a protein's hydrophobic core
Q27656422Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base
Q24669673Epsin 1 undergoes nucleocytosolic shuttling and its eps15 interactor NH(2)-terminal homology (ENTH) domain, structurally similar to Armadillo and HEAT repeats, interacts with the transcription factor promyelocytic leukemia Zn(2)+ finger protein (PLZ
Q27637724Evidence of intradomain and interdomain flexibility in an OmpR/PhoB homolog from Thermotoga maritima
Q41723783Free kick instead of cross-validation in maximum-likelihood refinement of macromolecular crystal structures.
Q37200953Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules
Q33978661Improved low-resolution crystallographic refinement with Phenix and Rosetta
Q24652426Investigating the structural plasticity of a cytochrome P450: three-dimensional structures of P450 EryK and binding to its physiological substrate.
Q92501252Inward-facing conformation of a multidrug resistance MATE family transporter
Q28131661Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
Q36713744Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias
Q28265806Kinetic and Structural Characterization of the Interaction of 6-Methylidene Penem 2 with the β-Lactamase from Mycobacterium tuberculosis
Q46259296Loop of Streptomyces feruloyl esterase plays an important role in its activity of releasing ferulic acid from biomass
Q40203560Macrocyclic aminopyrimidines as multitarget CDK and VEGF-R inhibitors with potent antiproliferative activities
Q27664123Molecular Basis of Vancomycin Dependence in VanA-Type Staphylococcus aureus VRSA-9
Q39130986Molecular symmetry-constrained systematic search approach to structure solution of the coiled-coil SRGAP2 F-BARx domain
Q27636044Mutational analysis of duck delta 2 crystallin and the structure of an inactive mutant with bound substrate provide insight into the enzymatic mechanism of argininosuccinate lyase
Q38806740Myristoylation drives dimerization of matrix protein from mouse mammary tumor virus
Q27679097NXL104 Irreversibly Inhibits the β-Lactamase from Mycobacterium tuberculosis
Q30419673Naturally occurring genetic variants of human caspase-1 differ considerably in structure and the ability to activate interleukin-1β.
Q35684932New method to compute Rcomplete enables maximum likelihood refinement for small datasets
Q28505589Notch-modifying xylosyltransferase structures support an SNi-like retaining mechanism
Q27653674Novel structural and regulatory features of rhoptry secretory kinases in Toxoplasma gondii
Q41685413O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking
Q27860782Overview of the CCP4 suite and current developments
Q27860905REFMAC5 for the refinement of macromolecular crystal structures
Q42709185Recent advances in the CRANK software suite for experimental phasing
Q56877800Recent developments for the efficient crystallographic refinement of macromolecular structures
Q29615315Recent developments in classical density modification
Q42586387Recent developments in phasing and structure refinement for macromolecular crystallography
Q34066538Recent developments in software for the automation of crystallographic macromolecular structure determination
Q42709189Reduction of density-modification bias by β correction.
Q55567656Refinement and Analysis of the Mature Zika Virus Cryo-EM Structure at 3.1 Å Resolution.
Q27678676S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS
Q33359210Solving the RNA polymerase I structural puzzle
Q27695579Space-group and origin ambiguity in macromolecular structures with pseudo-symmetry and its treatment with the program Zanuda
Q27659994Structural Elucidation of Cisoid and Transoid Cyclization Pathways of a Sesquiterpene Synthase Using 2-Fluorofarnesyl Diphosphates
Q37187965Structural analysis of Notch-regulating Rumi reveals basis for pathogenic mutations
Q42411842Structural analysis of caspase-1 inhibitors derived from Tethering.
Q30775729Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii
Q30977608Structural and biochemical characterization of CIB1 delineates a new family of EF-hand-containing proteins
Q40602718Structural and biochemical characterization of peroxiredoxin Qbeta from Xylella fastidiosa: catalytic mechanism and high reactivity
Q24594199Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme
Q24298355Structural basis for Arl3-specific release of myristoylated ciliary cargo from UNC119.
Q24316267Structural basis for recruitment of Rab6-interacting protein 1 to Golgi via a RUN domain
Q27639792Structural basis of Rab effector specificity: crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A
Q27637181Structural characterization of the intramolecular interaction between the SH3 and guanylate kinase domains of PSD-95
Q27654527Structural characterization of the protein cce_0567 from Cyanothece 51142, a metalloprotein associated with nitrogen fixation in the DUF683 family
Q37287204Structural model of the R state of Escherichia coli aspartate transcarbamoylase with substrates bound
Q61800203Structural studies of a surface-entropy reduction mutant of O-GlcNAcase
Q24528132Structural studies of duck delta2 crystallin mutants provide insight into the role of Thr161 and the 280s loop in catalysis
Q27652619Structure and Hemimethylated CpG Binding of the SRA Domain from Human UHRF1
Q27689753Structure and possible mechanism of the CcbJ methyltransferase from Streptomyces caelestis
Q27680647Structure of MurNAc 6-Phosphate Hydrolase (MurQ) from Haemophilus influenzae with a Bound Inhibitor
Q27644214Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15
Q27630200Structure of the ExoS GTPase activating domain
Q27652991Structure of the yeast Pml1 splicing factor and its integration into the RES complex
Q27651173Structures of synthetic O-antigen fragments from serotype 2a Shigella flexneri in complex with a protective monoclonal antibody
Q27644109Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism
Q27653276Substrate Orientation and Catalysis at the Molybdenum Site in Xanthine Oxidase: CRYSTAL STRUCTURES IN COMPLEX WITH XANTHINE AND LUMAZINE
Q27663278Substrate Orientation and Catalytic Specificity in the Action of Xanthine Oxidase: THE SEQUENTIAL HYDROXYLATION OF HYPOXANTHINE TO URIC ACID
Q27644959Substrate and Product Complexes of Escherichia coli Adenylosuccinate Lyase Provide New Insights into the Enzymatic Mechanism
Q27637485Substrate induced conformational changes in argininosuccinate synthetase
Q27649230Substrate orientation in xanthine oxidase: crystal structure of enzyme in reaction with 2-hydroxy-6-methylpurine
Q29616381Super-resolution biomolecular crystallography with low-resolution data
Q27683862Tebipenem, a New Carbapenem Antibiotic, Is a Slow Substrate That Inhibits the β-Lactamase from Mycobacterium tuberculosis
Q37522712The Crystal Structure of Monovalent Streptavidin
Q24675414The DH and PH domains of Trio coordinately engage Rho GTPases for their efficient activation
Q37038254The befores and afters of molecular replacement
Q42681077The crystal structure of Rv0793, a hypothetical monooxygenase from M. tuberculosis.
Q92508188The crystal structure of human microsomal triglyceride transfer protein
Q27640175The crystal structure of the phosphorylation domain in PhoP reveals a functional tandem association mediated by an asymmetric interface
Q58597695The molecular basis of protein toxin HicA-dependent binding of the protein antitoxin HicB to DNA
Q30380979The oxygenating constituent of 3,6-diketocamphane monooxygenase from the CAM plasmid of Pseudomonas putida: the first crystal structure of a type II Baeyer-Villiger monooxygenase.
Q61810225Thermostable Branched-Chain Amino Acid Transaminases From the Archaea and : Biochemical and Structural Characterization
Q27860678Towards automated crystallographic structure refinement with phenix.refine
Q39968674With phases: how two wrongs can sometimes make a right
Q27473281X-Ray Structures of the N- and C-Terminal Domains of a Coronavirus Nucleocapsid Protein: Implications for Nucleocapsid Formation
Q37074606X-ray structure determination at low resolution
Q27640518X-ray structure of the AAC(6')-Ii antibiotic resistance enzyme at 1.8 A resolution; examination of oligomeric arrangements in GNAT superfamily members
Q27646442X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus

Search more.