From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories

scientific article (publication date: 2016)

From GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2016PLoSO..1151232S
P356DOI10.1371/JOURNAL.PONE.0151232
P932PMC publication ID4788202
P698PubMed publication ID26967999
P5875ResearchGate publication ID297890888

P50authorRobert LückingQ21338799
P2093author name stringMark K Johnston
B Eugene Smith
P2860cites workContent assessment of the primary biodiversity data published through GBIF network: Status, challenges and potentialsQ57065906
DNA barcoding a useful tool for taxonomistsQ57241974
GenBankQ57635898
Global, 30-m resolution continuous fields of tree cover: Landsat-based rescaling of MODIS vegetation continuous fields with lidar-based estimates of errorQ58102694
Preserving Accuracy in GenBankQ59140488
Revisiting the taxonomic impedimentQ81300599
A single macrolichen constitutes hundreds of unrecognized speciesQ34002544
An alignment confidence score capturing robustness to guide tree uncertaintyQ34014420
Integrating biodiversity distribution knowledge: toward a global map of lifeQ34054456
The effects of sampling bias and model complexity on the predictive performance of MaxEnt species distribution modelsQ34606307
Towards a unified paradigm for sequence-based identification of fungiQ35013467
Error cascades in the biological sciences: the unwanted consequences of using bad taxonomy in ecologyQ48683532
Ecogeography of the genus Sticta (lichenized Ascomycota: Lobariaceae) in ColombiaQ50454842
Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria.Q51172584
AUC: a misleading measure of the performance of predictive distribution modelsQ56445156
Taxonomic misidentification in public DNA databasesQ56688719
Accounting for uncertainty when mapping species distributions: The need for maps of ignoranceQ56754576
The importance of correcting for sampling bias in MaxEnt species distribution modelsQ57005690
A statistical explanation of MaxEnt for ecologistsQ57062660
Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspectiveQ21090116
No specimen left behind: industrial scale digitization of natural history collectionsQ21128386
Taxonomic triage and the poverty of phylogenyQ22065920
Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity scienceQ22678826
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for FungiQ24630304
A DNA barcode for land plantsQ24655788
Biological identifications through DNA barcodesQ24669741
Symbiota - A virtual platform for creating voucher-based biodiversity information communitiesQ28655838
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesQ28658397
Neuropogon and the Phylogeny of Usnea s.l. (Parmeliaceae, Lichenized Ascomycetes)Q28959908
Terrestrial Ecoregions of the World: A New Map of Life on EarthQ29543325
Multiple alignment of DNA sequences with MAFFTQ29614386
Database resources of the National Center for Biotechnology InformationQ29614503
Very high resolution interpolated climate surfaces for global land areasQ29642135
How do you solve a problem like Letharia? A new look at cryptic species in lichen-forming fungi using Bayesian clustering and SNPs from multilocus sequence dataQ30000638
GUIDANCE: a web server for assessing alignment confidence scores.Q30484518
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for FungiQ30582014
Biodiversity data should be published, cited, and peer reviewedQ30645305
Mapping species distributions with MAXENT using a geographically biased sample of presence data: a performance assessment of methods for correcting sampling biasQ30818965
Sample selection bias and presence-only distribution models: implications for background and pseudo-absence dataQ33422416
Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in PanamaQ33511419
Current state and perspectives of fungal DNA barcoding and rapid identification proceduresQ33559987
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesArcGISQ513297
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
GenBankQ901755
data libraryQ5227240
occurrence dataQ111958254
P304page(s)e0151232
P577publication date2016-01-01
P1433published inPLOS OneQ564954
P1476titleFrom GenBank to GBIF: Phylogeny-Based Predictive Niche Modeling Tests Accuracy of Taxonomic Identifications in Large Occurrence Data Repositories
P478volume11

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cites work (P2860)
Q54985495Contrasting spatial, temporal and environmental patterns in observation and specimen based species occurrence data.
Q110854597Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics
Q59158005Taxonomy for Humans or Computers? Cognitive Pragmatics for Big Data
Q89559456The Global Museum: natural history collections and the future of evolutionary science and public education
Q93220921The history and impact of digitization and digital data mobilization on biodiversity research
Q47190300To increase trust, change the social design behind aggregated biodiversity data
Q59158004To increase trust, change the social design behind aggregated biodiversity data

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