A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses

scientific article

A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/MSPHERE.00275-16
P932PMC publication ID5156671
P698PubMed publication ID27981236

P50authorRichard H. ScheuermannQ30508615
Tavis K AndersonQ40933293
Ruben O DonisQ87441189
Amy L VincentQ88292443
Richard WebbyQ89595126
Catherine MackenQ117540617
P2093author name stringIan H Brown
C Todd Davis
Nicola S Lewis
Takehiko Saito
Ariel Pereda
Gaëlle Simon
Janice Ciacci-Zanella
Kristien Van Reeth
Sabrina L Swenson
Yohannes Berhane
P2860cites workMAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformQ24540347
Reassortment of pandemic H1N1/2009 influenza A virus in swineQ24622424
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communitiesQ24647611
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesQ28658397
Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemicQ29619055
Antigenic and genetic characteristics of swine-origin 2009 A(H1N1) influenza viruses circulating in humansQ29619059
European surveillance network for influenza in pigs: surveillance programs, diagnostic tools and Swine influenza virus subtypes identified in 14 European countries from 2010 to 2013.Q30370161
Reverse zoonosis of influenza to swine: new perspectives on the human-animal interface.Q30370471
Global migration of influenza A viruses in swineQ30373105
Continual Reintroduction of Human Pandemic H1N1 Influenza A Viruses into Swine in the United States, 2009 to 2014.Q30373314
Genetic Characterization of H1N1 and H1N2 Influenza A Viruses Circulating in Ontario Pigs in 2012.Q30375161
Influenza A Viruses of Human Origin in Swine, BrazilQ30377008
Molecular Epidemiology and Evolution of Influenza Viruses Circulating within European Swine between 2009 and 2013Q30377049
Novel Reassortant Human-Like H3N2 and H3N1 Influenza A Viruses Detected in Pigs Are Virulent and Antigenically Distinct from Swine Viruses Endemic to the United StatesQ30378432
Novel Human-like Influenza A Viruses Circulate in Swine in Mexico and Chile.Q30378867
The global antigenic diversity of swine influenza A virusesQ30387317
Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008.Q30397785
Enhanced pneumonia and disease in pigs vaccinated with an inactivated human-like (δ-cluster) H1N2 vaccine and challenged with pandemic 2009 H1N1 influenza virusQ30399540
Long-term evolution and transmission dynamics of swine influenza A virusQ30403142
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.Q30411991
Genetics, evolution, and the zoonotic capacity of European Swine influenza virusesQ30421632
Genetic reassortment between avian and human influenza A viruses in Italian pigsQ30422600
Emergence of avian H1N1 influenza viruses in pigs in China.Q30425686
Review of influenza A virus in swine worldwide: a call for increased surveillance and research.Q30429021
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference treeQ33733643
Genetic reassortment of avian, swine, and human influenza A viruses in American pigsQ33821531
Genetic characterization of H1N2 influenza A viruses isolated from pigs throughout the United States.Q33951575
The emergence of novel swine influenza viruses in North AmericaQ33959377
Interaction between Mycoplasma hyopneumoniae and swine influenza virusQ33972887
MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysisQ34393876
The impact of maternally derived immunity on influenza A virus transmission in neonatal pig populationsQ36501567
Hemagglutinin mutations related to antigenic variation in H1 swine influenza virusesQ36690683
Toward a unified nomenclature system for highly pathogenic avian influenza virus (H5N1).Q37009433
Efficacy in pigs of inactivated and live attenuated influenza virus vaccines against infection and transmission of an emerging H3N2 similar to the 2011-2012 H3N2vQ37123473
Hemagglutinin of swine influenza virus: a single amino acid change pleiotropically affects viral antigenicity and replicationQ37512317
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.Q37556959
Swine influenza virus vaccines: to change or not to change-that's the questionQ38043369
A brief introduction to influenza A virus in swine.Q38217786
Pathogenesis and vaccination of influenza A virus in swine.Q38230618
Dual infections of feeder pigs with porcine reproductive and respiratory syndrome virus followed by porcine respiratory coronavirus or swine influenza virus: a clinical and virological studyQ40672232
Characterization of co-circulating swine influenza A viruses in North America and the identification of a novel H1 genetic clade with antigenic significanceQ41378135
Persistence of Hong Kong influenza virus variants in pigsQ41511586
SWINE INFLUENZA : III. FILTRATION EXPERIMENTS AND ETIOLOGY.Q41943595
The epidemiology and evolution of influenza viruses in pigsQ43214794
Efficacy of vaccination of pigs with different H1N1 swine influenza viruses using a recent challenge strain and different parameters of protectionQ44286643
Ranking viruses: measures of positional importance within networks define core viruses for rational polyvalent vaccine development.Q44359045
Detection of Influenza A virus in porcine oral fluid samplesQ45068331
Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United StatesQ45382845
Effect of maternally derived antibodies on the clinical signs and immune response in pigs after primary and secondary infection with an influenza H1N1 virus.Q45728824
Disease outbreaks in pigs in Great Britain due to an influenza A virus of H1N2 subtypeQ45789144
How many bootstrap replicates are necessary?Q45952087
Antigenic drift in swine influenza H3 haemagglutinins with implications for vaccination policy.Q47973980
Efficacy of commercial swine influenza vaccines against challenge with a recent European H1N1 field isolateQ49113490
Antigenic and genetic diversity among swine influenza A H1N1 and H1N2 viruses in EuropeQ77801559
Population dynamics of cocirculating swine influenza A viruses in the United States from 2009 to 2012Q95826729
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectswine influenzaQ36855
phylogeneticsQ171184
automationQ184199
P577publication date2016-11-01
P1433published inmSphereQ27727104
P1476titleA Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses
P478volume1