Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes

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Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1036549442
P356DOI10.1186/S13059-016-0883-6
P932PMC publication ID4766624
P698PubMed publication ID26911872
P5875ResearchGate publication ID295686643

P50authorRoderic Guigó i SerraQ19720095
Anna VlasovaQ53779773
Cedric NotredameQ53780372
Alfredo Herrera-EstrellaQ56483060
Pablo Prieto BarjaQ57340038
Nuria AndreuQ57454368
Jèssica Gómez GarridoQ58205484
Maik ZehnsdorfQ58394618
Miguel Hernández-OñateQ58394638
Toni GabaldónQ27942012
Walter SanseverinoQ30519385
Salvador Capella-GutierrezQ30519398
Tyler AliotoQ37389576
Ionas ErbQ38155249
Jordi Garcia-MasQ41810087
Luis DelayeQ43023246
Heinz HimmelbauerQ47007236
P2093author name stringLuca Cozzuto
Francisco Câmara
O Mario Aguilar
Ernesto Lowy
Alfonso Delgado-Salinas
André Corvelo
Darek Kedra
Federico Sánchez
Juliane C Dohm
André E Minoche
Georgios J Pappas
Alejandro Mentaberry
Marta Santalla
Martha Rendón-Anaya
Martín P Vázquez
Gastón Westergaard
Irene Gonzalez
José Luís García
María A Aguilar-Morón
Rosana P Vianello-Brondani
Soledad Saburido-Alvarez
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Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the AndesQ60299818
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Domestication patterns in common bean (Phaseolus vulgaris L.) and the origin of the Mesoamerican and Andean cultivated racesQ81285547
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Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence dataQ34185529
An RNA-Seq based gene expression atlas of the common beanQ34333041
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Diversification and population structure in common beans (Phaseolus vulgaris L.).Q34474534
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AUGUSTUS: ab initio prediction of alternative transcriptsQ34548015
Identification of presumed ancestral DNA sequences of phaseolin in Phaseolus vulgarisQ34687259
Splitting pairs: the diverging fates of duplicated genesQ34988378
Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathwaysQ35008864
Long non-coding RNA expression profiling of mouse testis during postnatal developmentQ35018398
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomesQ35052103
Legumes: importance and constraints to greater use.Q35088171
Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common BeanQ35172335
Duplicate gene enrichment and expression pattern diversification in multicellularityQ36228459
Approaches for extracting practical information from gene co-expression networks in plant biologyQ36717674
Using genomics to study legume seed developmentQ36843614
High-throughput genotyping by whole-genome resequencing.Q37222784
Large-scale assignment of orthology: back to phylogenetics?Q37317242
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Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris LQ41272736
A reference genome for common bean and genome-wide analysis of dual domesticationsQ42664823
Fine-grained annotation and classification of de novo predicted LTR retrotransposons.Q42957758
Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from MesoamericaQ43729764
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplicationQ44412238
The complex domestication history of the common beanQ44432571
Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybeanQ44903553
Structure of genetic diversity in the two major gene pools of common bean (Phaseolus vulgaris L., Fabaceae).Q45986183
Using geneid to identify genesQ46051912
Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.).Q46195887
A genome-wide analysis of differentiation between wild and domesticated Phaseolus vulgaris from Mesoamerica.Q46242132
Assigning duplication events to relative temporal scales in genome-wide studiesQ47344017
Identification of an ancestral resistance gene cluster involved in the coevolution process between Phaseolus vulgaris and its fungal pathogen Colletotrichum lindemuthianumQ47927143
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesedgeRQ113334690
P921main subjecttranscriptomeQ252857
gene duplicationQ746284
P304page(s)32
P577publication date2016-02-25
P1433published inGenome BiologyQ5533480
P1476titleGenome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
P478volume17

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