Molecular dynamics simulation strategies for protein-micelle complexes.

scientific article

Molecular dynamics simulation strategies for protein-micelle complexes. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.BBAMEM.2015.12.012
P932PMC publication ID4877248
P698PubMed publication ID26679426

P50authorWonpil ImQ63854235
James U. BowieQ66309414
P2093author name stringXi Cheng
Yangmee Kim
Jin-Kyoung Kim
P2860cites workX-ray structure of a voltage-dependent K+ channelQ22337257
Structure of the KvAP voltage-dependent K+ channel and its dependence on the lipid membraneQ24534875
CHARMM: the biomolecular simulation programQ24658108
Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environmentQ27649044
Solution Structure and Phospholipid Interactions of the Isolated Voltage-Sensor Domain from KvAPQ27664582
All-atom empirical potential for molecular modeling and dynamics studies of proteinsQ27860468
Update of the CHARMM all-atom additive force field for lipids: validation on six lipid typesQ29616710
Spontaneous formation of detergent micelles around the outer membrane protein OmpX.Q30160297
CHARMM-GUI micelle builder for pure/mixed micelle and protein/micelle complex systems.Q30352184
NMR-based simulation studies of Pf1 coat protein in explicit membranesQ30352716
Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determinationQ30353771
Mixing and matching detergents for membrane protein NMR structure determinationQ30376879
NMR observable-based structure refinement of DAP12-NKG2C activating immunoreceptor complex in explicit membranesQ30415353
A pedestrian guide to membrane protein crystallizationQ30434293
Automated builder and database of protein/membrane complexes for molecular dynamics simulationsQ33298604
NMR structural and dynamical investigation of the isolated voltage-sensing domain of the potassium channel KvAP: implications for voltage gatingQ33548080
CHARMM-GUI Membrane Builder toward realistic biological membrane simulationsQ34195752
Relating surfactant properties to activity and solubilization of the human adenosine a3 receptorQ34350530
Solid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit MembranesQ35529996
Structure and function of papiliocin with antimicrobial and anti-inflammatory activities isolated from the swallowtail butterfly, Papilio xuthusQ35842107
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force FieldQ36461179
Solution NMR of membrane proteins: practice and challengesQ36529904
CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.Q36539936
The membrane protein LeuT in micellar systems: aggregation dynamics and detergent binding to the S2 siteQ37210872
CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranesQ37263413
Molecular Dynamics Simulations of a Characteristic DPC Micelle in WaterQ40276978
An efficient strategy for high-throughput expression screening of recombinant integral membrane proteinsQ42020331
Molecular dynamics simulations of GlpF in a micelle vs in a bilayer: conformational dynamics of a membrane protein as a function of environmentQ79934346
CHARMM-GUI: a web-based graphical user interface for CHARMMQ80900573
P433issue7 Pt B
P407language of work or nameEnglishQ1860
P921main subjectmicellesQ421110
molecular dynamics simulationQ901663
P304page(s)1566-1572
P577publication date2015-12-08
P1433published inBiochimica et Biophysica ActaQ864239
P1476titleMolecular dynamics simulation strategies for protein-micelle complexes.
P478volume1858

Reverse relations

cites work (P2860)
Q38793733CHARMM-GUI 10 years for biomolecular modeling and simulation
Q30396234CHARMM-GUI MDFF/xMDFF Utilizer for Molecular Dynamics Flexible Fitting Simulations in Various Environments
Q51010962Molecular dynamics approach to understand the denaturing effect of a millimolar concentration of dodine on a λ-repressor and counteraction by trehalose.
Q63547192Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance
Q54966402Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies.

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