| Q58998531 | A Reduced Drosophila Model Whose Characteristic Behavior Scales Up |
| Q49925187 | A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila. |
| Q26748497 | A glance at the applications of Singular Spectrum Analysis in gene expression data |
| Q42554453 | A matter of timing and precision |
| Q27438148 | A precise Bicoid gradient is nonessential during cycles 11-13 for precise patterning in the Drosophila blastoderm |
| Q41883291 | A quantitative atlas of Even-skipped and Hunchback expression in Clogmia albipunctata (Diptera: Psychodidae) blastoderm embryos |
| Q40066189 | A quantitative validated model reveals two phases of transcriptional regulation for the gap gene giant in Drosophila. |
| Q33982148 | A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ |
| Q41034775 | A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. |
| Q110949709 | A software for parameter optimization with Differential Evolution Entirely Parallel method |
| Q30484713 | A spatial toggle switch drives boundary formation in development |
| Q27335212 | A staging scheme for the development of the moth midge Clogmia albipunctata |
| Q27335243 | A staging scheme for the development of the scuttle fly Megaselia abdita |
| Q41791001 | A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design |
| Q37086183 | A systems view of Drosophila segmentation |
| Q64074763 | ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the blastoderm |
| Q36587205 | Accurate measurements of dynamics and reproducibility in small genetic networks |
| Q27315068 | Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo |
| Q37671981 | Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change |
| Q36360169 | Ancient role of ten-m/odz in segmentation and the transition from sequential to syncytial segmentation |
| Q34336602 | Artificial selection on egg size perturbs early pattern formation in Drosophila melanogaster. |
| Q30664024 | Bicoid signal extraction with a selection of parametric and nonparametric signal processing techniques |
| Q28474898 | Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors |
| Q28475017 | Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation |
| Q39125529 | Causality analysis detects the regulatory role of maternal effect genes in the early Drosophila embryo |
| Q22065320 | Comparative transcriptomics of early dipteran development |
| Q21092422 | Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness |
| Q46272156 | Conservation and variation in pair-rule gene expression and function in the intermediate-germ beetle Dermestes maculatus |
| Q34936171 | Determining the scale of the Bicoid morphogen gradient |
| Q36269531 | Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression |
| Q36799112 | Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network |
| Q42708323 | Dynamic patterning by the Drosophila pair-rule network reconciles long-germ and short-germ segmentation |
| Q30585347 | Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos |
| Q36483784 | Dynamics and heterogeneity of a fate determinant during transition towards cell differentiation |
| Q34341320 | Efficient reverse-engineering of a developmental gene regulatory network |
| Q52801348 | Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors. |
| Q91650607 | Evolution and Developmental System Drift in the Endoderm Gene Regulatory Network of Caenorhabditis and Other Nematodes |
| Q34783457 | Fates-shifted is an F-box protein that targets Bicoid for degradation and regulates developmental fate determination in Drosophila embryos |
| Q37202793 | FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution |
| Q41263453 | From gross anatomy to the nanomorphome: stereological tools provide a paradigm for advancing research in quantitative morphomics. |
| Q97542507 | Fully interpretable deep learning model of transcriptional control |
| Q33473126 | GCPReg package for registration of the segmentation gene expression data in Drosophila |
| Q40076909 | Gap Gene Regulatory Dynamics Evolve along a Genotype Network. |
| Q33513960 | Gene circuit analysis of the terminal gap gene huckebein |
| Q37611219 | Genotype-phenotype mapping developmental biology confronts the toolkit paradox |
| Q30952264 | High-resolution gene expression data from blastoderm embryos of the scuttle fly Megaselia abdita |
| Q35057688 | How to make stripes: deciphering the transition from non-periodic to periodic patterns in Drosophila segmentation |
| Q33460925 | Identifying regulatory elements in eukaryotic genomes |
| Q51272308 | In silico evolution of gene cooption in pattern-forming gene networks. |
| Q60009397 | Kinetic sculpting of the seven stripes of the Drosophila even-skipped gene |
| Q40070747 | Lack of tailless leads to an increase in expression variability in Drosophila embryos. |
| Q57071084 | Lessons and perspectives for applications of stochastic models in biological and cancer research |
| Q33306149 | Master equation simulation analysis of immunostained Bicoid morphogen gradient |
| Q38559873 | Maternal AP determinants in the Drosophila oocyte and embryo. |
| Q35574635 | Maternal co-ordinate gene regulation and axis polarity in the scuttle fly Megaselia abdita |
| Q33771747 | Maternal origins of developmental reproducibility |
| Q21202782 | Mechanisms of gap gene expression canalization in the Drosophila blastoderm |
| Q34431457 | Medium-throughput processing of whole mount in situ hybridisation experiments into gene expression domains |
| Q33426312 | Methods for Acquisition of Quantitative Data from Confocal Images of Gene Expression in situ |
| Q30786469 | Mitosis-associated repression in development |
| Q34395206 | Modeling of gap gene expression in Drosophila Kruppel mutants |
| Q83231071 | Modularity, criticality, and evolvability of a developmental gene regulatory network |
| Q36285886 | Modulation of temporal dynamics of gene transcription by activator potency in the Drosophila embryo |
| Q26775531 | Morphogen rules: design principles of gradient-mediated embryo patterning |
| Q92286420 | Multimodal transcriptional control of pattern formation in embryonic development |
| Q33933371 | Multiscale modeling of diffusion in the early Drosophila embryo |
| Q27329971 | Mutual repression enhances the steepness and precision of gene expression boundaries |
| Q42158879 | Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster |
| Q33553273 | Naturally occurring deletions of hunchback binding sites in the even-skipped stripe 3+7 enhancer |
| Q36761380 | Neural Progenitors Adopt Specific Identities by Directly Repressing All Alternative Progenitor Transcriptional Programs |
| Q41171690 | Odd-paired controls frequency doubling in Drosophila segmentation by altering the pair-rule gene regulatory network |
| Q33372318 | Pipeline for acquisition of quantitative data on segmentation gene expression from confocal images |
| Q43095247 | Positional information, positional error, and readout precision in morphogenesis: a mathematical framework |
| Q46672650 | Pre-steady and stable morphogen gradients: can they coexist? |
| Q33805909 | Precision and scaling in morphogen gradient read-out |
| Q41833800 | Probing the impact of temperature on molecular events in a developmental system |
| Q37068518 | Properties of developmental gene regulatory networks |
| Q90984649 | Quantitative analysis reveals genotype- and domain- specific differences between mRNA and protein expression of segmentation genes in Drosophila |
| Q43918213 | Quantitative dynamics and increased variability of segmentation gene expression in the Drosophila Krüppel and knirps mutants. |
| Q28649544 | Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita |
| Q45027045 | Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors |
| Q34611185 | Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic |
| Q35034121 | Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster |
| Q35539101 | Sequence-based model of gap gene regulatory network. |
| Q36784738 | Sex-specific pattern formation during early Drosophila development |
| Q39770511 | Shaped singular spectrum analysis for quantifying gene expression, with application to the early Drosophila embryo |
| Q34032641 | Shaping a morphogen gradient for positional precision |
| Q51538823 | Stability of localized wave fronts in bistable systems. |
| Q39913108 | Stochastic model for gene transcription on Drosophila melanogaster embryos |
| Q33552533 | Stochastic spatio-temporal dynamic model for gene/protein interaction network in early Drosophila development. |
| Q40125671 | Studies of stability mechanisms of early embryonal development of fruit fly Drosophila |
| Q41897396 | SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos |
| Q47169081 | Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. |
| Q36392137 | Temporal and spatial dynamics of scaling-specific features of a gene regulatory network in Drosophila |
| Q90646388 | Temporal dynamics of pair-rule stripes in living Drosophila embryos |
| Q27345017 | Temporal ordering and registration of images in studies of developmental dynamics |
| Q37798472 | The gap gene network. |
| Q37634222 | The other side of phenotypic plasticity: a developmental system that generates an invariant phenotype despite environmental variation |
| Q36236771 | The role of Bicoid cooperative binding in the patterning of sharp borders in Drosophila melanogaster |
| Q50662872 | The scaling and shift of morphogen gene expression boundary in a nonlinear reaction diffusion system. |
| Q39771923 | Time to move on: Modeling transcription dynamics during an embryonic transition away from maternal control |
| Q38822859 | Transcriptional bursting in Drosophila development: Stochastic dynamics of eve stripe 2 expression. |
| Q41228232 | Translating natural genetic variation to gene expression in a computational model of the Drosophila gap gene regulatory network. |
| Q34706799 | Uncovering a dynamic feature of the transcriptional regulatory network for anterior-posterior patterning in the Drosophila embryo |