Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs.

scientific article

Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.JSB.2012.03.001
P932PMC publication ID3440181
P698PubMed publication ID22433493
P5875ResearchGate publication ID221877070

P50authorWilly WriggersQ64675783
P2093author name stringAlexander Rigort
Mirabela Rusu
Zbigniew Starosolski
Manuel Wahle
P2860cites workThe Mechanism of HIV-1 Core Assembly: Insights from Three-Dimensional Reconstructions of Authentic VirionsQ27702100
Cellular motility driven by assembly and disassembly of actin filamentsQ27860676
Situs: A package for docking crystal structures into low-resolution maps from electron microscopyQ29619796
Evaluation of denoising algorithms for biological electron tomography.Q33347243
Using Situs for the integration of multi-resolution structuresQ33651334
Automated segmentation of electron tomograms for a quantitative description of actin filament networksQ34015806
Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryosQ34106008
Electron tomography: towards visualizing the molecular organization of the cytoplasmQ35016025
Evolutionary bidirectional expansion for the tracing of alpha helices in cryo-electron microscopy reconstructions.Q35783224
Computational exploration of structural information from cryo-electron tomograms.Q35802648
Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapesQ35961701
Three-dimensional reconstruction of single particles from random and nonrandom tilt seriesQ39545938
Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructionsQ40621151
Organization of actin networks in intact filopodiaQ41625141
A novel three-dimensional variant of the watershed transform for segmentation of electron density mapsQ44011181
Interactive fitting augmented by force-feedback and virtual reality.Q47353997
Multi-resolution contour-based fitting of macromolecular structuresQ57975967
Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron TomographyQ58022774
Noise Reduction in Electron Tomographic Reconstructions Using Nonlinear Anisotropic DiffusionQ58022775
Denoising of electron tomographic reconstructions using multiscale transformationsQ74088559
Structure and function of the Arp2/3 complexQ78725219
P433issue2
P921main subjectautomationQ184199
P304page(s)121-128
P577publication date2012-03-13
P1433published inJournal of Structural BiologyQ3186947
P1476titleAutomated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs
P478volume178

Reverse relations

cites work (P2860)
Q891458413D Segmentation Algorithms for Computerized Tomographic Imaging: a Systematic Literature Review
Q418816453D actin network centerline extraction with multiple active contours
Q28553701A Robust Actin Filaments Image Analysis Framework
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Q38625764Automated segmentation and quantification of actin stress fibres undergoing experimentally induced changes
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Q30389112Comparison of an Atomic Model and Its Cryo-EM Image at the Central Axis of a Helix
Q28727240Computational opportunities for remote collaboration and capacity building afforded by Web 2.0 and cloud computing
Q30573485Developing a denoising filter for electron microscopy and tomography data in the cloud.
Q35769560Extraction of Individual Filaments from 2D Confocal Microscopy Images of Flat Cells
Q35822566Multi-scale Visualization of Molecular Architecture Using Real-Time Ambient Occlusion in Sculptor
Q30379679Numerical geometry of map and model assessment.
Q30828872Quantifying Variability of Manual Annotation in Cryo-Electron Tomograms
Q52325120Tracing Actin Filament Bundles in Three-Dimensional Electron Tomography Density Maps of Hair Cell Stereocilia.
Q41596564Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

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