Computational analysis of plasmepsin IV bound to an allophenylnorstatine inhibitor.

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Computational analysis of plasmepsin IV bound to an allophenylnorstatine inhibitor. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.FEBSLET.2006.09.057
P698PubMed publication ID17045991
P5875ResearchGate publication ID6749625

P50authorJohan ÅqvistQ6255800
Hugo Gutiérrez de TeránQ37388229
Martin NervallQ114440719
P2093author name stringBen M Dunn
Jose C Clemente
P2860cites workStructure and inhibition of plasmepsin II, a hemoglobin-degrading enzyme from Plasmodium falciparumQ24597864
MEROPS: the peptidase databaseQ25255626
Comparison of simple potential functions for simulating liquid waterQ26778447
Anisotropic dynamics of the JE-2147-HIV protease complex: drug resistance and thermodynamic binding mode examined in a 1.09 A structureQ27638669
Novel uncomplexed and complexed structures of plasmepsin II, an aspartic protease from Plasmodium falciparumQ27640611
Structural insights into the activation of P. vivax plasmepsinQ27641327
Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50 per cent inhibition (I50) of an enzymatic reactionQ27860958
Development and validation of a genetic algorithm for flexible dockingQ28236574
Structure-activity relationship of small-sized HIV protease inhibitors containing allophenylnorstatineQ28377023
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesQ29397708
Improved protein-ligand docking using GOLDQ29616787
Four plasmepsins are active in the Plasmodium falciparum food vacuole, including a protease with an active-site histidineQ30042887
C2-symmetric inhibitors of Plasmodium falciparum plasmepsin II: synthesis and theoretical predictionsQ31151933
Plasmepsin 4, the food vacuole aspartic proteinase found in all Plasmodium spp. infecting man.Q33193846
Binding affinity prediction with different force fields: examination of the linear interaction energy methodQ33202843
Virtual screening for beta-secretase (BACE1) inhibitors reveals the importance of protonation states at Asp32 and Asp228.Q33215820
Macrocyclic inhibitors of the malarial aspartic proteases plasmepsin I, II, and IV.Q33227803
Inhibitor binding to the plasmepsin IV aspartic protease from Plasmodium falciparumQ33255678
Follow the protons: a low-barrier hydrogen bond unifies the mechanisms of the aspartic proteasesQ34401682
Structure of the aspartic protease plasmepsin 4 from the malarial parasite Plasmodium malariae bound to an allophenylnorstatine-based inhibitorQ34498794
Designing non-peptide peptidomimetics in the 21st century: inhibitors targeting conformational ensembles.Q34503862
Aspartic proteases of Plasmodium falciparum and other parasitic protozoa as drug targets.Q34548661
The integration of genomic and structural information in the development of high affinity plasmepsin inhibitorsQ34999498
A distinct member of the aspartic proteinase gene family from the human malaria parasite Plasmodium falciparumQ38527989
The role of hydrogen bonding in the enzymatic reaction catalyzed by HIV-1 proteaseQ42051224
Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272.Q43452863
Ab initio molecular dynamics-based assignment of the protonation state of pepstatin A/HIV-1 protease cleavage siteQ43727557
High-affinity inhibition of a family of Plasmodium falciparum proteases by a designed adaptive inhibitorQ44511791
Determination of the active site protonation state of beta-secretase from molecular dynamics simulation and docking experiment: implications for structure-based inhibitor designQ44704283
A phenylnorstatine inhibitor binding to HIV-1 protease: geometry, protonation, and subsite-pocket interactions analyzed at atomic resolution.Q44823661
Modeling the protonation states of the catalytic aspartates in beta-secretaseQ45084450
Search for substrate-based inhibitors fitting the S2' space of malarial aspartic protease plasmepsin II.Q45165701
Computation of affinity and selectivity: binding of 2,4-diaminopteridine and 2,4-diaminoquinazoline inhibitors to dihydrofolate reductasesQ47742338
P433issue25
P407language of work or nameEnglishQ1860
P304page(s)5910-5916
P577publication date2006-10-05
P1433published inFEBS LettersQ1388051
P1476titleComputational analysis of plasmepsin IV bound to an allophenylnorstatine inhibitor
P478volume580

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cites work (P2860)
Q35660425Antimalarial activity enhancement in hydroxymethylcarbonyl (HMC) isostere-based dipeptidomimetics targeting malarial aspartic protease plasmepsin.
Q39162889Combined kinetic studies and computational analysis on kojic acid analogous as tyrosinase inhibitors.
Q47970644Computational analysis of aspartic protease plasmepsin II complexed with EH58 inhibitor: a QM/MM MD study
Q33961367Computational perspectives into plasmepsins structure-function relationship: implications to inhibitors design
Q27667575Crystal structures of the free and inhibited forms of plasmepsin I (PMI) from Plasmodium falciparum
Q43180983Pyrrolidine derivatives as plasmepsin inhibitors: binding mode analysis assisted by molecular dynamics simulations of a highly flexible protein

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