GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization

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GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1031756510
P356DOI10.1186/1471-2164-8-289
P932PMC publication ID2018728
P698PubMed publication ID17714599
P5875ResearchGate publication ID6124606

P50authorAkash RanjanQ42067431
P2093author name stringVaibhav Vindal
Katta Suma
P2860cites workImproving the specificity of high-throughput ortholog predictionQ24685511
CDD: a Conserved Domain Database for protein classificationQ24795306
SCRATCH: a protein structure and structural feature prediction serverQ24812422
Basic local alignment search toolQ25938991
Profile hidden Markov modelsQ27860536
Multiple sequence alignment with hierarchical clusteringQ27860956
TreeView: an application to display phylogenetic trees on personal computersQ27861074
Analysis of the gluconate (gnt) operon of Bacillus subtilisQ28305914
GabR, a member of a novel protein family, regulates the utilization of gamma-aminobutyrate in Bacillus subtilisQ28488830
Construction of phylogenetic treesQ29547497
Enhanced genome annotation using structural profiles in the program 3D-PSSMQ29547847
JPred: a consensus secondary structure prediction serverQ29614378
Cloning and characterization of the genes encoding a cytochrome P450 (PipA) involved in piperidine and pyrrolidine utilization and its regulatory protein (PipR) in Mycobacterium smegmatis mc2155.Q30577825
HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase foldQ30935453
The pdx genetic marker adjacent to the chloramphenicol biosynthesis gene cluster in Streptomyces venezuelae ISP5230: functional characterizationQ31948839
MycoperonDB: a database of computationally identified operons and transcriptional units in MycobacteriaQ33270388
A new family of bacterial regulatory proteinsQ33626593
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.Q33787465
Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamiliesQ34106565
PlmA, a new member of the GntR family, has plasmid maintenance functions in Anabaena sp. strain PCC 7120.Q34214854
Regulation of the Mycobacterium tuberculosis mce1 operonQ34303211
Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships.Q35618547
Nucleotide sequence of the gene encoding the repressor for the histidine utilization genes of Pseudomonas putidaQ36254119
Identification of a fatty acyl responsive regulator (FarR) in Escherichia coliQ38301144
PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.Q41010515
iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic speciesQ41965546
Molecular biology of carbon-phosphorus bond cleavage. Cloning and sequencing of the phn (psiD) genes involved in alkylphosphonate uptake and C-P lyase activity in Escherichia coli B.Q42631360
Thermostable aspartate aminotransferase from a thermophilic Bacillus species. Gene cloning, sequence determination, and preliminary x-ray characterization.Q43017410
The gene yghK linked to the glc operon of Escherichia coli encodes a permease for glycolate that is structurally and functionally similar to L-lactate permeaseQ43562839
Identification and characterization of the Bacillus subtilis D-glucarate/galactarate utilization operon ycbCDEFGHJ.Q44014568
The trehalose operon of Pseudomonas fluorescens ATCC 17400.Q48380274
Purification, characterization and mode of action of PdhR, the transcriptional repressor of the pdhR-aceEF-lpd operon of Escherichia coliQ72318927
Identification and characterization of a novel transcriptional regulator, MatR, for malonate metabolism in Rhizobium leguminosarum bv. trifoliiQ73269853
Cross-induction of glc and ace operons of Escherichia coli attributable to pathway intersection. Characterization of the glc promoterQ77765524
In silico analysis and characterization of GntR family of regulators from Mycobacterium tuberculosisQ79459962
Comparative analysis of iron regulated genes in mycobacteriaQ83187990
P407language of work or nameEnglishQ1860
P921main subjectMycobacterium smegmatisQ606230
P304page(s)289
P577publication date2007-08-23
P1433published inBMC GenomicsQ15765854
P1476titleGntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization
P478volume8

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cites work (P2860)
Q36407973A copper-responsive global repressor regulates expression of diverse membrane-associated transporters and bacterial drug resistance in mycobacteria
Q34242424Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins
Q35001097Chapter 1: Variation in form and function the helix-turn-helix regulators of the GntR superfamily.
Q35621446Crystal Structure of Fad35R from Mycobacterium tuberculosis H37Rv in the Apo-State.
Q38293254Deciphering the regulon of a GntR family regulator via transcriptome and ChIP-exo analyses and its contribution to virulence in Xanthomonas citri
Q42140448Differential regulation of high-affinity phosphate transport systems of Mycobacterium smegmatis: identification of PhnF, a repressor of the phnDCE operon
Q28487351Equilibrium binding and kinetic characterization of putative tetracycline repressor family transcription regulator Fad35R from Mycobacterium tuberculosis
Q34177816Functional characterization of pGKT2, a 182-kilobase plasmid containing the xplAB genes, which are involved in the degradation of hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia sp. strain KTR9.
Q41598213Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome
Q34191680Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association
Q35675954Global analyses of TetR family transcriptional regulators in mycobacteria indicates conservation across species and diversity in regulated functions
Q29346752Identification of operator sites within the upstream region of the putative mce2R gene from mycobacteria.
Q28487198Mce2R from Mycobacterium tuberculosis represses the expression of the mce2 operon
Q42138747MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes
Q35598609Mycobacterium smegmatis RoxY is a repressor of oxyS and contributes to resistance to oxidative stress and bactericidal ubiquitin-derived peptides
Q37044428Mycobacterium tuberculosis Rv1152 is a Novel GntR Family Transcriptional Regulator Involved in Intrinsic Vancomycin Resistance and is a Potential Vancomycin Adjuvant Target
Q37545760RNA sequencing reveals differences between the global transcriptomes of Salmonella enterica serovar enteritidis strains with high and low pathogenicities.
Q34995029The DNA-binding network of Mycobacterium tuberculosis
Q36511397The Global Reciprocal Reprogramming between Mycobacteriophage SWU1 and Mycobacterium Reveals the Molecular Strategy of Subversion and Promotion of Phage Infection
Q43482723The thnR gene is a negative transcription regulator of the thurincin H genetic cassette in Bacillus thuringiensis subsp. morrisoni
Q42584419The volatiles of pathogenic and nonpathogenic mycobacteria and related bacteria
Q36506224Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes
Q48125025Transcriptional regulators of GntR family in Streptomyces coelicolor A3(2): analysis in silico and in vivo of YtrA subfamily
Q34314123Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria
Q90265637YtrASa, a GntR-Family Transcription Factor, Represses Two Genetic Loci Encoding Membrane Proteins in Sulfolobus acidocaldarius

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