TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.

scientific article

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bioinformatics/MilneLBHMMW09
P356DOI10.1093/BIOINFORMATICS/BTN575
P932PMC publication ID2638937
P698PubMed publication ID18984599
P5875ResearchGate publication ID23451857

P50authorDirk HusmeierQ89688938
David F MarshallQ47532473
Iain MilneQ56434732
Dominik LindnerQ56512372
Micha BayerQ56854772
P2093author name stringFrank Wright
Gráinne McGuire
P2860cites workChoosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding SequencesQ56877001
MODELTEST: testing the model of DNA substitutionQ26778437
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsQ27860746
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
Phylogeny.fr: robust phylogenetic analysis for the non-specialistQ29547666
Molecular phylogenetics: state-of-the-art methods for looking into the pastQ30665919
TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignmentsQ33198709
Variation in evolutionary processes at different codon positionsQ40267893
The troubled growth of statistical phylogenetics.Q53426621
P433issue1
P407language of work or nameEnglishQ1860
P1104number of pages2
P304page(s)126-127
P577publication date2008-11-04
P1433published inBioinformaticsQ4914910
P1476titleTOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops
P478volume25

Reverse relations

cites work (P2860)
Q38684396A Survey of the Gene Repertoire of Gigaspora rosea Unravels Conserved Features among Glomeromycota for Obligate Biotrophy.
Q34163379A bacterial proteorhodopsin proton pump in marine eukaryotes
Q34423105A genome wide association scan for (1,3;1,4)-β-glucan content in the grain of contemporary 2-row Spring and Winter barleys
Q98778742A history of study and new records of terrestrial enchytraeids (Annelida, Clitellata, Enchytraeidae) from the Russian Far East
Q37169188A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual
Q40277465A molecular epidemiology of treponemes in beef cattle digital dermatitis lesions and comparative analyses with sheep contagious ovine digital dermatitis and dairy cattle digital dermatitis lesions.
Q104454341A molecular phylogeny of carcinoecium-forming Epizoanthus (Hexacorallia: Zoantharia) from the Western Pacific Ocean with descriptions of three new species
Q34619527A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Aves: Picidae).
Q31062005A new potentially toxic Azadinium species (Dinophyceae) from the Mediterranean Sea, A. dexteroporum sp. nov.
Q41931232A novel grablovirus from non-cultivated grapevine (Vitis sp.) in North America.
Q57476488A phylogeny and the evolution of epizoism within the family Hydrozoanthidae with description of a new genus and two new species
Q30429755A single early introduction of HIV-1 subtype B into Central America accounts for most current cases
Q92578798Adaptation of host transmission cycle during Clostridium difficile speciation
Q58576610Additions to the taxonomy of and (Hymenochaetales, Basidiomycota)
Q35687653Against All Odds: Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desiccation
Q118163341Allophlebia, a new genus to accomodate Phlebia ludoviciana (Agaricomycetes, Polyporales)
Q41008129An ancient interlocus recombination increases class II MHC DQA diversity in sheep and other Bovidae.
Q37876970Analysing recombination in nucleotide sequences
Q36252457Analysis of influenza A viruses of subtype H1 from wild birds, turkeys and pigs in Germany reveals interspecies transmission events.
Q51803418Analysis of phenotypic evolution in Dictyostelia highlights developmental plasticity as a likely consequence of colonial multicellularity.
Q51802341Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2, and -3 are the dominant paralogs.
Q40206564Analysis of the genetic diversity of ovine herpesvirus 2 in samples from livestock with malignant catarrhal fever.
Q43617007Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat.
Q44367762Ancient islands and modern invasions: disparate phylogeographic histories among Hispaniola's endemic birds
Q31048127Anonymous nuclear markers data supporting species tree phylogeny and divergence time estimates in a cactus species complex in South America
Q40306279Anonymous nuclear markers reveal taxonomic incongruence and long-term disjunction in a cactus species complex with continental-island distribution in South America
Q39405034Arbuscular mycorrhizal fungi communities from tropical Africa reveal strong ecological structure
Q34458252Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum
Q35866495Barcoding Techniques Help Tracking the Evolutionary History of the Introduced Species Pennaria disticha (Hydrozoa, Cnidaria)
Q35060647Bayesian inference of the evolution of HBV/E
Q90269473Belowground plant parts are crucial for comprehensively estimating total plant richness in herbaceous and woody habitats
Q104454986Biogeography and evolution of Central American cloud forest salamanders (Caudata: Plethodontidae:Cryptotriton), with the description of a new species
Q39848963Bioinformatics and Molecular Analysis of the Evolutionary Relationship between Bovine Rhinitis A Viruses and Foot-And-Mouth Disease Virus
Q40342629Bovine ischaemic teat necrosis: a further potential role for digital dermatitis treponemes.
Q73817493Brachionus paranguensis sp. nov. (Rotifera, Monogononta), a member of the L group of the Brachionus 23. plicatilis complex
Q26866022Calcineurin-Crz1 signaling in lower eukaryotes
Q57292204Characterisation of Stramenopile-specific mastigoneme proteins in Phytophthora parasitica
Q64892099Characterisation of major histocompatibility complex class IIa haplotypes in an island sheep population.
Q34212881Characterization and gene expression analysis of the cir multi-gene family of Plasmodium chabaudi chabaudi (AS).
Q33393641Characterization of a new simian immunodeficiency virus strain in a naturally infected Pan troglodytes troglodytes chimpanzee with AIDS related symptoms
Q43513801Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species
Q47553940Circulation of Alphacoronavirus, Betacoronavirus and Paramyxovirus in Hipposideros bat species in Zimbabwe.
Q35371319ClbP is a prototype of a peptidase subgroup involved in biosynthesis of nonribosomal peptides
Q36321492Comparative analysis data of SF1 and SF2 helicases from three domains of life
Q45802452Comparative analysis of known miRNAs across platyhelminths
Q35964159Comparative genomics analysis of pKF3-94 in Klebsiella pneumoniae reveals plasmid compatibility and horizontal gene transfer
Q45880783Comparative genomics reveals the presence of putative toxin-antitoxin system in Wolbachia genomes.
Q46480461Comparative transcriptomics reveal host-specific nucleotide variation in entomophthoralean fungi
Q34500172Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions.
Q37526173Composition of the Hemagglutinin Polybasic Proteolytic Cleavage Motif Mediates Variable Virulence of H7N7 Avian Influenza Viruses
Q58784868Computational Methods in Microbial Population Genomics
Q35584624Concordant genetic structure in two species of woodpecker distributed across the primary West African biogeographic barriers
Q50882978Crosstalk of two-component signal transduction systems in regulating central carbohydrate and energy metabolism during autotrophic and photomixotrophic growth of Synechocystis sp. PCC 6803.
Q45835489Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana).
Q46604124Data processing can mask biology: towards better reporting of fungal barcoding data?
Q34123845Deep evolutionary conservation of an intramolecular protein kinase activation mechanism.
Q35302350Deep sequencing of the Trypanosoma cruzi GP63 surface proteases reveals diversity and diversifying selection among chronic and congenital Chagas disease patients
Q30581004Delimiting genetic units in Neotropical toads under incomplete lineage sorting and hybridization
Q61808273Description of Aeminiaceae fam. nov., Aeminium gen. nov. and Aeminium ludgeri sp. nov. (Capnodiales), isolated from a biodeteriorated art-piece in the Old Cathedral of Coimbra, Portugal
Q91588222Detection and Characterization of Invertebrate Iridoviruses Found in Reptiles and Prey Insects in Europe over the Past Two Decades
Q57446986Detection of phytopathogens of the genusDickeyausing a PCR primer prediction pipeline for draft bacterial genome sequences
Q40237559Digital dermatitis treponemes associated with a severe foot disease in dairy goats.
Q57064612Directed terminal restriction analysis tool (DRAT): an aid to enzyme selection for directed terminal-restriction fragment length polymorphisms
Q55350234Dissecting the phyloepidemiology of Trypanosoma cruzi I (TcI) in Brazil by the use of high resolution genetic markers.
Q40995549Distinguishing functional polymorphism from random variation in the sequences of >10,000 HLA-A, -B and -C alleles
Q30718316Diversification and gene flow in nascent lineages of island and mainland North American tree squirrels (Tamiasciurus).
Q38856028Diversifying evolution of highly pathogenic H5N1 avian influenza virus in Egypt from 2006 to 2011.
Q39569532Diversity of root-associated arbuscular mycorrhizal fungal communities in a rubber tree plantation chronosequence in Northeast Thailand
Q116988968Diversity of the Genus Calocybella Vizzini, Consiglio & Setti in Kerala State, India
Q35828109Diversity within the entomopathogenic fungal species Metarhizium flavoviride associated with agricultural crops in Denmark.
Q61685343Duplication of hsp-110 Is Implicated in Differential Success of Globodera Species under Climate Change
Q91268387Dynamic expression of Drosophila segmental cell surface-encoding genes and their pair-rule regulators
Q57036623Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases
Q36532593Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal
Q52594110Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene.
Q46251234Elevational distribution and morphological attributes of the entomopathogenic fungi from forests of the Qinling Mountains in China.
Q37742325Enhancing the toolbox to study IL-17A in cattle and sheep.
Q46436309Eocene lantern fruits from Gondwanan Patagonia and the early origins of Solanaceae
Q35567253Estimating the temporal and spatial extent of gene flow among sympatric lizard populations (genus Sceloporus) in the southern Mexican highlands
Q42017809Ethanolamine utilization in Vibrio alginolyticus
Q21131144Evidence for horizontal gene transfer of anaerobic carbon monoxide dehydrogenases
Q48057576Evidence for recombination in neboviruses
Q37059719Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563.
Q110693586Evolution and phylogeny of glass-sponge-associated zoantharians, with a description of two new genera and three new species
Q34738154Evolution of smooth tubercle Bacilli PE and PE_PGRS genes: evidence for a prominent role of recombination and imprint of positive selection
Q35758058FUNGAL SYMBIONTS. Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism.
Q40703980First Molecular Characterization of Aspiculuris tetraptera (Nematoda: Heteroxynematidae) from Mus musculus (Rodentia: Muridae) in India
Q36035638First molecular phylogeny of scorpions of the family Buthidae from India
Q58607948First report of natural Wolbachia infection in wild Anopheles funestus population in Senegal
Q31009534Five new species of Inocybe (Agaricales) from tropical India
Q35894964Food Reformulation, Responsive Regulation, and "Regulatory Scaffolding": Strengthening Performance of Salt Reduction Programs in Australia and the United Kingdom
Q28596204Founder events and pre-glacial divergences shape the genetic structure of European Collembola species
Q35967505Frequent recombination shapes the epidemic population structure of Planktothrix (Cyanoprokaryota) in Italian subalpine lakes
Q33963463Full-length genome analyses of two new simian immunodeficiency virus (SIV) strains from mustached monkeys (C. Cephus) in Gabon illustrate a complex evolutionary history among the SIVmus/mon/gsn lineage
Q37405537Functional C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis
Q36289117Fungal Planet description sheets: 469-557
Q46271953Gene Acquisition by a Distinct Phyletic Group within Streptococcus pneumoniae Promotes Adhesion to the Ocular Epithelium.
Q27303173Genetic Variability of Bovine Viral Diarrhea Virus and Evidence for a Possible Genetic Bottleneck during Vertical Transmission in Persistently Infected Cattle
Q58585825Genetic diversity and hybrid formation in Central European club-mosses (Diphasiastrum, Lycopodiaceae) - new insights from cp microsatellites, two nuclear markers and AFLP
Q36988357Genetic diversity of STLV-2 and interspecies transmission of STLV-3 in wild-living bonobos
Q33752089Genetic diversity of hepatitis C virus in Ethiopia
Q45369282Genetic diversity of sweet potato begomoviruses in the United States and identification of a natural recombinant between sweet potato leaf curl virus and sweet potato leaf curl Georgia virus
Q36272789Genetic structure and distribution of Parisotoma notabilis (Collembola) in Europe: Cryptic diversity, split of lineages and colonization patterns
Q21092268Genome and phylogenetic analyses of trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty
Q37598097Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes
Q46927739Genome size differences in Hyalella cryptic species
Q46265242Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family
Q42064403Genome-wide networks of amino acid covariances are common among viruses
Q28740353Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire
Q33547718Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri
Q41063587Genotyping of Cucumber mosaic virus isolates in western New York State during epidemic years: Characterization of an emergent plant virus population
Q54377216Gibberellin 3-oxidases in developing embryos of the southern wild cucumber, Marah macrocarpus
Q34592185Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi
Q91652299Great diversity of Piroplasmida in Equidae in Africa and Europe, including potential new species
Q28546232Haemophilus ducreyi Cutaneous Ulcer Strains Are Nearly Identical to Class I Genital Ulcer Strains
Q39332246Hepatitis B virus genetic diversity has minimal impact on sensitivity of the viral ribonuclease H to inhibitors.
Q35682554Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family
Q35008449Hidden diversity in the Andes: comparison of species delimitation methods in montane marsupials.
Q36096423High Rate of Simian Immunodeficiency Virus (SIV) Infections in Wild Chimpanzees in Northeastern Gabon
Q90759159High cryptic diversity of bitterling fish in the southern West Palearctic
Q33636547High diversity and suggested endemicity of culturable Actinobacteria in an extremely oligotrophic desert oasis
Q36971144High genetic diversity of Newcastle disease virus in poultry in West and Central Africa: cocirculation of genotype XIV and newly defined genotypes XVII and XVIII
Q34382818High level of structural polymorphism driven by mobile elements in the Hox genomic region of the Chaetognath Spadella cephaloptera
Q35455646High-level association of bovine digital dermatitis Treponema spp. with contagious ovine digital dermatitis lesions and presence of Fusobacterium necrophorum and Dichelobacter nodosus.
Q35563081Highly divergent 18S rRNA gene paralogs in a Cryptosporidium genotype from eastern chipmunks (Tamias striatus).
Q39034497Highly pathogenic avian influenza virus H5N1 from Egypt escapes vaccine-induced immunity but confers clinical protection against a heterologous clade 2.2.1 Egyptian isolate.
Q34159574Identification and localisation of the NB-LRR gene family within the potato genome
Q35979703Identification and molecular characterization of new simian T cell lymphotropic viruses in nonhuman primates bushmeat from the Democratic Republic of Congo
Q56578458Identification of emu-TegP11, an EF-hand domain-containing tegumental protein of Echinococcus multilocularis
Q38368845Idiosyncratic responses to climate-driven forest fragmentation and marine incursions in reed frogs from Central Africa and the Gulf of Guinea Islands
Q36112613Improved strategy for phylogenetic analysis of classical swine fever virus based on full-length E2 encoding sequences
Q90578136In vitro anticancer activity of methanolic extract of Granulocystopsis sp., a microalgae from an oligotrophic oasis in the Chihuahuan desert
Q34038255Inferring species trees from gene trees in a radiation of California trapdoor spiders (Araneae, Antrodiaetidae, Aliatypus)
Q39994797Integrative Taxonomy Recognizes Evolutionary Units Despite Widespread Mitonuclear Discordance: Evidence from a Rotifer Cryptic Species Complex
Q57010810Inter- and intrasporal nuclear ribosomal gene sequence variation within one isolate of arbuscular mycorrhizal fungus, Diversispora sp
Q28713965Is gene flow promoting the reversal of pleistocene divergence in the Mountain Chickadee (Poecile gambeli)?
Q39064928Isolation and characterisation of a Sphingomonas strain able to degrade the fungicide ortho-phenylphenol.
Q38990539Isolation of H9N2 avian influenza virus from bobwhite quail (Colinus virginianus) in Egypt
Q36268530Isolation of a bacterial consortium able to degrade the fungicide thiabendazole: the key role of a Sphingomonas phylotype
Q40346031Isolation of digital dermatitis treponemes from cattle hock skin lesions
Q34917126Isolation of digital dermatitis treponemes from hoof lesions in Wild North American Elk (Cervus elaphus) in Washington State, USA
Q35667112Isolation-driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae).
Q33841894Legionella cardiaca sp. nov., isolated from a case of native valve endocarditis in a human heart
Q57003818Limited diversity associated with duplicated class II MHC-DRB genes in the red squirrel population in the United Kingdom compared with continental Europe
Q101632215Lizards from the Lost World: two new species and evolutionary relationships of the Pantepui highland Riolama (Gymnophthalmidae)
Q55004065Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
Q38763738Meloidogyne graminicola: a major threat to rice agriculture.
Q51602781Mitochondrial and nuclear DNA sequences reveal recent divergence in morphologically indistinguishable petrels.
Q33712502Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae)
Q36379347Mitogenomics data reveal effective population size, historical bottlenecks, and the effects of hunting on New Zealand fur seals (Arctocephalus forsteri).
Q30397591Molecular Characterization of Nippostrongylus brasiliensis (Nematoda: Heligmosomatidae) from Mus musculus in India
Q28551137Molecular Evolution and Characterization of Hemagglutinin (H) in Peste des Petits Ruminants Virus
Q35989059Molecular Phylogeny of Nematodes (Oxyurida: Travassosinematidae) from Orthoptera (Gryllotalpidae) Inferred by Mitochondrial Cytochrome C Oxidase Subunit 1 Gene
Q42947126Molecular and biochemical characterization of the natural chromosome-encoded class A beta-lactamase from Pseudomonas luteola
Q33757343Molecular diagnosis and characterization of Cryptosporidium spp. in turkeys and chickens in Germany reveals evidence for previously undetected parasite species
Q35140255Molecular epidemiology and phylogeny reveal complex spatial dynamics in areas where canine parvovirus is endemic.
Q33614358Molecular epidemiology of simian immunodeficiency virus infection in wild-living gorillas
Q33909118Molecular evidence that deep-branching fungi are major fungal components in deep-sea methane cold-seep sediments.
Q56341639Molecular systematics of the caracaras and allies (Falconidae: Polyborinae) inferred from mitochondrial and nuclear sequence data
Q40160656Morphological and Molecular Characterization of Metacercaria of Tylodelphys (Digenea: diplostomidae) from the Piscine Host, Mystus tengara from India
Q46306035Morphological and molecular analyses of Tylodelphys spp. metacercaria (Trematoda: Diplostomidae) from the vitreous humour of two freshwater fish species, Channa gachua (Ham.) and Puntius sophore (Ham.).
Q90957151Morphological and phylogenetic diversity of Waminoa and similar flatworms (Acoelomorpha) in the western Pacific Ocean
Q52562390Morphological, histological, and molecular description of Myxobolus ompok n. sp. (Myxosporea: Myxobolidae), a kidney myxozoan from Pabdah catfish Ompok pabda (Hamilton, 1822) (Siluriformes: Siluridae) in India.
Q46669238Morphology and molecular analysis of Mizelleus indicus Jain () and M. longicirrus (Tripathi, ) Venkatanarasaiah & Kulkarni 1981 (Monogenea, Dactylogyridae) from the freshwater shark Wallago attu in the Ganga River, India
Q39914613Morphology, molecular and systematic analyses of Bychowskyella (Monogenea: Dactylogyridae) in siluriform fish from India
Q30594970Morphology, seasonality and phylogeny of Zschokkella soleae sp. n. (Myxozoa, Myxosporea) parasite of Solea solea (L.) (Pleuronectiformes, Soleidae) from Ghar El Melh Lagoon, Tunisia
Q44703368Mosaic evolution of silk genes in Aliatypus trapdoor spiders (mygalomorphae, antrodiaetidae).
Q58855328Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland
Q28602713Multilocus Phylogeography and Species Delimitation in the Cumberland Plateau Salamander, Plethodon kentucki: Incongruence among Data Sets and Methods
Q28830377Multilocus Sequence Typing of Pathogenic Treponemes Isolated from Cloven-Hoofed Animals and Comparison to Treponemes Isolated from Humans
Q36284531Multilocus phylogeny of alligator lizards (Elgaria, Anguidae): Testing mtDNA introgression as the source of discordant molecular phylogenetic hypotheses
Q54268183Multilocus sequence typing: genetic diversity in Trypanosoma cruzi I (TcI) isolates from Brazilian didelphids.
Q54268601Multiple Introductions of Influenza A(H5N8) Virus into Poultry, Egypt, 2017.
Q46986730Myxobolus ophiocarae sp. n. (Myxozoa: Myxosporea: Bivalvulida) infecting the gill of wild goby, Ophiocara porocephala (Perciformes: Gobioidei) in Malaysia
Q34332819Myxozoan infection of the Malaysian mahseer, Tor tambroides, of Tasik Kenyir Reservoir, Malaysia: description of a new species Myxobolus tambroides sp.n
Q56992677Myxozoan infections of the three Indian major carps in fish ponds around Meerut, UP, India, with descriptions of three new species, Myxobolus basuhaldari sp. n., M. kalavatiae sp. n. and M. meerutensis sp. n., and the redescription of M. catlae and M
Q61446739Nature of selection varies on different domains of IFI16-like PYHIN genes in ruminants
Q30496636Nephromyces, a beneficial apicomplexan symbiont in marine animals
Q28833686New Hosts of The Lassa Virus
Q36146520New STLV-3 strains and a divergent SIVmus strain identified in non-human primate bushmeat in Gabon
Q91643893Next-Generation Sequencing on Insectivorous Bat Guano: An Accurate Tool to Identify Arthropod Viruses of Potential Agricultural Concern
Q36246353Noninvasive follow-up of simian immunodeficiency virus infection in wild-living nonhabituated western lowland gorillas in Cameroon
Q42590701Novel chlamydia-like organisms as cause of bovine abortions, UK
Q34240898Novel multiplexed HIV/simian immunodeficiency virus antibody detection assay
Q40047189Occurrence and effect of trematode metacercariae in two endangered killifishes from Greece.
Q37105669Occurrence of cyclic di-GMP-modulating output domains in cyanobacteria: an illuminating perspective.
Q118163238On Sistotremastrum and similar-looking taxa (Trechisporales, Basidiomycota)
Q57114778Overseas dispersal ofHyperoliusreed frogs from Central Africa to the oceanic islands of São Tomé and Príncipe
Q46127677PTP-central: a comprehensive resource of protein tyrosine phosphatases in eukaryotic genomes
Q33511320Palmyramide A, a cyclic depsipeptide from a Palmyra Atoll collection of the marine cyanobacterium Lyngbya majuscula
Q41122635Paralog re-emergence: a novel, historically contingent mechanism in the evolution of antimicrobial resistance.
Q31081859Pethia sanjaymoluri, a new species of barb (Teleostei: Cyprinidae) from the northern Western Ghats, India
Q92453189Pheromones and Barcoding Delimit Boundaries between Cryptic Species in the Primitive Moth Genus Eriocrania (Lepidoptera: Eriocraniidae)
Q35025516Phyletic distribution of fatty acid-binding protein genes
Q89735675Phylogenetic Position of Pleurogenoides Species (Plagiorchiida: Pleurogenidae) from the Duodenum of Indian Skipper Frog, Euphlyctis Cyanophlyctis (Amphibia: Dicroglossidae) Inhabiting the Western Ghats, India
Q28831059Phylogenetic Variants of Rickettsia africae, and Incidental Identification of "Candidatus Rickettsia Moyalensis" in Kenya
Q36396698Phylogenetic analysis and polyphasic characterization of Clavibacter michiganensis strains isolated from tomato seeds reveal that nonpathogenic strains are distinct from C. michiganensis subsp. michiganensis
Q39923490Phylogenetic analysis of human influenza A/H3N2 viruses isolated in 2015 in Germany indicates significant genetic divergence from vaccine strains.
Q85611481Phylogenetic analysis of the Argonaute protein family in platyhelminths
Q39372404Phylogenetic relationships of the enigmatic longtailed rattlesnakes (Crotalus ericsmithi, C. lannomi, and C. stejnegeri).
Q35211220Phylogenomics of the killer whale indicates ecotype divergence in sympatry.
Q28287202Phylogeny and prevalence of kobuviruses in dogs and cats in the UK
Q28741052Phylogeny estimation of the radiation of western North American chipmunks (Tamias) in the face of introgression using reproductive protein genes
Q40673326Phylogeny of the Vitamin K 2,3-Epoxide Reductase (VKOR) Family and Evolutionary Relationship to the Disulfide Bond Formation Protein B (DsbB) Family
Q42001402Phylogeography and evolution of a fungal-insect association on the Tibetan Plateau
Q64077737Phylogeography of Borrelia spirochetes in Ixodes pacificus and Ixodes spinipalpis ticks highlights differential acarological risk of tick-borne disease transmission in northern versus southern California
Q57227815Phylogeography of the fiscal shrike (Lanius collaris): a novel pattern of genetic structure across the arid zones and savannas of Africa
Q54741468Phytophthora acerina sp. nov., a new species causing bleeding cankers and dieback of Acer pseudoplatanus trees in planted forests in northern Italy
Q44964251Phytophthora pini Leonian resurrected to distinct species status
Q46267197Plant traits determine the phylogenetic structure of arbuscular mycorrhizal fungal communities.
Q30555808Pliocene diversification within the South American Forest falcons (Falconidae: Micrastur).
Q34474218Processing of Chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle
Q56878331ProtTest-HPC: Fast Selection of Best-Fit Models of Protein Evolution
Q37729441Protection of the Queuosine Biosynthesis Enzyme QueF from Irreversible Oxidation by a Conserved Intramolecular Disulfide
Q38910648Proteomic analysis of Taenia ovis metacestodes by high performance liquid chromatography-coupled tandem mass spectrometry
Q34087701Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species
Q36845290Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference
Q26768582Rabies in the Baltic States: Decoding a Process of Control and Elimination
Q30563770Rapid diversification of falcons (Aves: Falconidae) due to expansion of open habitats in the Late Miocene
Q34362858Recent diversification of a marine genus (Tursiops spp.) tracks habitat preference and environmental change
Q39892549Recombination Signals In The rpoC1 Gene Indicate Gene-Flow Between Planktothrix (Cyanoprokaryota) Species.
Q92118351Redescription and molecular analysis of Neoechinorhynchus (Neoechinorhynchus) johnii Yamaguti, 1939 (Acanthocephala, Neoechinorhynchidae) from the Pacific Ocean off Vietnam
Q38965281Redescription of Henneguya chaudhuryi (Bajpai & Haldar, 1982) (Myxosporea: Myxobolidae), infecting the gills of the freshwater fish Channa punctata (Bloch) (Perciformes: Channidae) in India
Q31033727Relative Roles of Deterministic and Stochastic Processes in Driving the Vertical Distribution of Bacterial Communities in a Permafrost Core from the Qinghai-Tibet Plateau, China
Q50061747Selection, periodicity and potential function for Highly Iterative Palindrome-1 (HIP1) in cyanobacterial genomes
Q46561477Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions of Rhizophagus irregularis and Gigaspora margarita is high and isolate-dependent
Q38480451Sequencing, De Novo assembly and annotation of the Colorado Potato Beetle, Leptinotarsa decemlineata, Transcriptome
Q33729594Sex pheromone biosynthetic pathways are conserved between moths and the butterfly Bicyclus anynana
Q111627807Significance of incongruent DNA loci in the taxonomy of wood-decaying Basidioradulum radula
Q27301355Skipping of exons by premature termination of transcription and alternative splicing within intron-5 of the sheep SCF gene: a novel splice variant
Q39647751Spatial and taxonomical overlap of fungi on phylloplanes and invasive alien ladybirds with fungal infections in tree crowns of urban green spaces
Q34634566Speciation in the White-breasted Nuthatch (Sitta carolinensis): a multilocus perspective
Q31087996Species delimitation, phylogeny and evolutionary demography of co-distributed, montane frogs in the southern Brazilian Atlantic Forest
Q46249164Species limits in the Morelet's Alligator lizard (Anguidae: Gerrhonotinae).
Q28649998Spiders on a Hot Volcanic Roof: Colonisation Pathways and Phylogeography of the Canary Islands Endemic Trap-Door Spider Titanidiops canariensis (Araneae, Idiopidae)
Q35606396Streptophyte phytochromes exhibit an N-terminus of cyanobacterial origin and a C-terminus of proteobacterial origin
Q118162759Studies on Gymnopus sect. Impudicae (Omphalotaceae, Agaricales) from Northern Brazil: two new species and notes on G. montagnei
Q36976092Surveillance on A/H5N1 virus in domestic poultry and wild birds in Egypt
Q39780494Symbiont dynamics during ecosystem succession: co-occurring plant and arbuscular mycorrhizal fungal communities
Q116673027Systematic placement of Lagarobasidium cymosum and description of two new species
Q118163177Taxonomic novelties in Trechispora (Trechisporales, Basidiomycota) from Brazil
Q40539269Taxonomy proposal for Old World monkey adenoviruses: characterisation of several non-human, non-ape primate adenovirus lineages
Q54802016Tepoztequiella rhizoidea gen. et sp. nov. (Solieriaceae, Rhodophyta) from the Yucatan Peninsula, Mexico
Q37631520The Distribution of Lectins across the Phylum Nematoda: A Genome-Wide Search
Q89266712The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions
Q41141595The RAS subfamily Evolution - tracing evolution for its utmost exploitation
Q58702714The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense
Q33516333The avocado subgroup of Phytophthora citricola constitutes a distinct species, Phytophthora mengei sp. nov.
Q35111417The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-β-glucan synthase gene family
Q36158669The complete nucleotide sequence and genomic characterization of grapevine asteroid mosaic associated virus
Q34487503The complex phylogeography of the Indo-Malayan Alophoixus bulbuls with the description of a putative new ring species complex
Q35560306The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species
Q35269004The composition of arbuscular mycorrhizal fungal communities in the roots of a ruderal forb is not related to the forest fragmentation process
Q24657394The evolution of amastin surface glycoproteins in trypanosomatid parasites
Q33828503The expansion of the PRAME gene family in Eutheria
Q33657949The first complete genome sequence of a non-chicken aviadenovirus, proposed to be turkey adenovirus 1.
Q36119582The gastrointestinal tract as a potential infection reservoir of digital dermatitis-associated treponemes in beef cattle and sheep.
Q34343473The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses
Q35013224The influence of sampling design on species tree inference: a new relationship for the New World chickadees (Aves: Poecile).
Q34289292The irreversible loss of a decomposition pathway marks the single origin of an ectomycorrhizal symbiosis
Q33571019The molecular evolution of PL10 homologs
Q110693519The morphological and molecular description of Neoechinorhynchus (Neoechinorhynchus) poonchensis sp. n. from Schizothorax richardsonii (Gray) in Poonch, Jammu and Kashmir, India
Q54667045The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp. nov
Q41779334The multicellularity genes of dictyostelid social amoebas
Q28830590The phylogenetic position of Myxoboluscarnaticus (Myxozoa, Myxosporea, Bivalvulida) infecting gill lamellae of Cirrhinus mrigala (Hamilton, 1822) based on 18S rRNA sequence analysis
Q33390848The phylogenetics of the global population of potato virus Y and its necrogenic recombinants
Q41436775The repertoires of ubiquitinating and deubiquitinating enzymes in eukaryotic genomes
Q42491909The susceptibility of diverse species of cultured oligochaetes to the fish parasite Myxobolus pseudodispar Gorbunova (Myxozoa).
Q31032916The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.).
Q43936941The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley
Q34366679The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes
Q92515735Three genetically distinct ferlaviruses have varying effects on infected corn snakes (Pantherophis guttatus)
Q28596149Tobamoviruses have probably co-diverged with their eudicotyledonous hosts for at least 110 million years
Q28538795Tollip or not Tollip: what are the evolving questions behind it?
Q28243187Toward a stable classification of genera within the Entolomataceae: a phylogenetic re-evaluation of the Rhodocybe-Clitopilus clade
Q33627650Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep
Q34547551Ultrastructure and molecular phylogenetic position of Heteronema scaphurum: a eukaryovorous euglenid with a cytoproct
Q35030920Uncovering cryptic diversity and refugial persistence among small mammal lineages across the Eastern Afromontane biodiversity hotspot
Q28262747Using Tablet for visual exploration of second-generation sequencing data
Q30867401Using multi-locus allelic sequence data to estimate genetic divergence among four Lilium (Liliaceae) cultivars
Q34676513Variable interaction specificity and symbiont performance in Panamanian Trachymyrmex and Sericomyrmex fungus-growing ants.
Q89686189Variant antigen diversity in Trypanosoma vivax is not driven by recombination
Q37701247Visualization of multiple alignments, phylogenies and gene family evolution
Q104624950Zoantharia (Cnidaria: Hexacorallia) of the Dutch Caribbean and One New Species of Parazoanthus
Q37245811jpHMM: improving the reliability of recombination prediction in HIV-1.
Q110951578Battle of the bands: systematics and phylogeny of the white Goniobranchus nudibranchs with marginal bands (Nudibranchia, Chromodorididae)

Search more.