Exploiting transcriptome data for the development and characterization of gene-based SSR markers related to cold tolerance in oil palm (Elaeis guineensis).

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Exploiting transcriptome data for the development and characterization of gene-based SSR markers related to cold tolerance in oil palm (Elaeis guineensis). is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1041360396
P356DOI10.1186/S12870-014-0384-2
P932PMC publication ID4279980
P698PubMed publication ID25522814
P5875ResearchGate publication ID269769244

P50authorYaodong YangQ57422986
Annaliese S MasonQ57422988
P2093author name stringWei Xia
Ming Peng
Yong Xiao
Zilong Ma
Lixia Zhou
P2860cites workEST-SSRs as a resource for population genetic analyses.Q36829463
Cold stress regulation of gene expression in plants.Q36940323
Assessment of genetic diversity in the sorghum reference set using EST-SSR markersQ38421092
The Arabidopsis ATAF1, a NAC transcription factor, is a negative regulator of defense responses against necrotrophic fungal and bacterial pathogensQ43279683
Housekeeping and tissue-specific genes differ in simple sequence repeats in the 5'-UTR regionQ44933299
A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applicationsQ45094903
Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism.Q51871438
A comparative linkage map of oilseed rape and its use for QTL analysis of seed oil and erucic acid contentQ58798749
Development of a population for substantial new type Brassica napus diversified at both A/C genomesQ84427666
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.Q22122136
Inference of population structure using multilocus genotype dataQ24548114
Full-length transcriptome assembly from RNA-Seq data without a reference genomeQ24620766
Primer3 on the WWW for general users and for biologist programmersQ27861030
Microsatellites within genes: structure, function, and evolutionQ28245197
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation studyQ29547289
The significance of digital gene expression profilesQ29614357
Identifying differentially expressed genes using false discovery rate controlling proceduresQ29615200
Isolation and characterization of polymorphic microsatellites in Cocos nucifera L.Q30760897
In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species.Q30862893
Characterisation of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species.Q30871152
Microsatellite-based high density linkage map in oil palm (Elaeis guineensis Jacq.).Q31148799
Oil palm (Elaeis guineensis Jacq.) tissue culture ESTs: identifying genes associated with callogenesis and embryogenesisQ33338292
SSR mining in oil palm EST database: application in oil palm germplasm diversity studies.Q33699732
Whole genome wide expression profiles of Vitis amurensis grape responding to downy mildew by using Solexa sequencing technologyQ33732161
Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.).Q33772826
SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensisQ34116358
Computational and experimental characterization of physically clustered simple sequence repeats in plantsQ34610643
Genic microsatellite markers in plants: features and applicationsQ35998457
Development and application of microsatellites in candidate genes related to wood properties in the Chinese white poplar (Populus tomentosa Carr.).Q36622249
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P921main subjectElaeis guineensisQ165403
cold hardinessQ52694041
P304page(s)384
P577publication date2014-12-19
P1433published inBMC Plant BiologyQ15760766
P1476titleExploiting transcriptome data for the development and characterization of gene-based SSR markers related to cold tolerance in oil palm (Elaeis guineensis).
P478volume14

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cites work (P2860)
Q89860041Characteristics of Microsatellites Mined from Transcriptome Data and the Development of Novel Markers in Paeonia lactiflora
Q64097012Elymus nutans genes for seed shattering and candidate gene-derived EST-SSR markers for germplasm evaluation
Q37363700Genome-Wide Identification and Transferability of Microsatellite Markers between Palmae Species.
Q57168098High-throughput SSR marker development and its application in a centipedegrass (Eremochloa ophiuroides (Munro) Hack.) genetic diversity analysis
Q30389088Oil palm natural diversity and the potential for yield improvement
Q35795924PSR: polymorphic SSR retrieval

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